Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1179 |
Symbol | |
ID | 4922594 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1366677 |
End bp | 1370291 |
Gene Length | 3615 bp |
Protein Length | 1204 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640162713 |
Product | type IV pilin biogenesis protein, putative |
Protein accession | YP_001093308 |
Protein GI | 127512111 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATATTT TGCGCGCTGG TCAGTCTGCT CTGGCAAATA TCATAATGCA GCGAAAGGGA GAGCTTGTGA AAAGCTTTGT TGCTCTGTTG ACTGCCATCA TGAGTCTTCT CTCGGCTTCT TCGTGGGCCG ACGATACCGA GTTATATGTC TATGAGGCGA GCGCCCGTAC TGGGGCTAGG CCACAAATCC TGATCATCTT CGATAACTCT GGCAGTATGA GCACCAAAGT CTATGACGTG GATAAACCTT ATACGCCGGG AGCTGGGGGC GGCTCGCGTT ACAATAACGG CAAGAAAGGG ATGCTCTATT ACGTAAAAGG TGATCAGGGT AAGAATAAGT TGCCCGACCC CGATGACCCT AATGAACGAC GTAAATTTTC AGGCACCATC AATAGCTGCG GTAGCTCCTG GGAGTTCCTG AACGACTATG GCATCTTTAC CGGTTTCTTC CGTAAGTATA CCTTTAGCGG TGCCAACGGT GCCTGGCGTG AGTTTGGCGA TAACAATGGT CTGAATGCTA AGGCGGTGGA TTGCTACGAA GATATTCAGG AAGGCAATTA TCTTAATGCT AAGGGATTAA CCTCGGGGCT ACCTGTCGAT AGTTTGGGAT CTCCCACCAC GCCTATCATG TATAACAATG TCAGCAGTAG TTCGAGTGAT AGCATCAAGA AGACCGCCAA GGAGCAGGCG CAGCTTACCG GCTTTGGTAC CGGGCGGGTG CTCACCGTGT ATACCGAGGA TTACCTTCGC TGGCATCACA ATGCAAACAA GAAACAAGAA GATAAAACTC GCTTAGAGCT GGCCAAAGAT GCGATTAAAA ACGTCATCTT AACCACCCCG GGAGTGGATT TCGGCCTGGC AATTTTCAAC ATGAATGGCC CAGATGACAC CCTATATAAT GGCCGTAACG GTGGGCGCAT CATCAAAGCC ATTCAGACCC TGACGCCAGG GCAAAAAAAG ACACTACTCA GTGGGGTTAA AGATATTGAG TATGGCTGGA ACACCCCCCT GTGTGAAACC CTTTACGAGG CCTATCGTTA CTTCGCCGGT AAGTCTGTGG AGTTTGGCGA TGATGATAAG GATTATACCT ATGAATCATG GGGCCGATGG GTAACTTATA GAGCCAATAA AAATGATAGT TTGGACAAGG ATGCGCTTGT TAAGGGAACA AATACCTATC AATCCCCCTT TAAGAAGTGT CAGAACAACG CCTATATCGT CTTCATAACA GATGGGGAAC CGACCCTAGA CAGCGCCGCC GATGTGGAAG TCACGAAGTT AACCGGTGGC GTCGATAAGC ACAGCACTAG TTACATGAGC GCGCTGTCGA GTTGGATGTA TCGCAAAGAT GTAAACCCTA ACATGGATGG CGATCAGCAT GTGATCACCC ACACCATTGG CTTCAGTGAG GGGGCAAAAA ATGCCGAAGA TCTGTTGAAG AAGGTGGCGA GCAAGGGGGG CGGAAGCTAT TTCGATGCCA CCGATGCGAC TAAGCTGCAG GGCTCTATTC AACAGGCGGT GAATGAGGTG TTGGCCAACA GCGCAAGTTT TACTTCTCCC TCTGTGGCCA GCAACAACTT TAACCGTACC CAGACTTTTA ACTATGCCTA TTACTCCATG TTCCTGCCGG ACAGAGGTCC GCGCTGGACG GGGAATATCA AGAAGTTCAG AGTCGCCGCC GATGGGACAG TTTTGGACGC AGAGGGTAAA ATAGCGTTGG GTGATGACGG TAACATCAAG GATAGCGCCT GCTCCTACTG GACGCCCAAG AAGCTTTGTG GCGATGGCAA CGATGTGCGC AAGGGGGGCG TCCTGTCGGC GATGCAGAGT GCCGATAGCC GAACCCTATA CAGTAATTTG GGGGGCGGCA TGGATACGCT CAGCCTGTCG GCGGCGGCCA CCAAGGCAGG TGGTCAGGAA GACCTGGCCA ATTTCATGGG TGTTGATAAG AGTCAGCTCA CTAACCTATT CGATTGGGCT AAGGGGCTGG ATGTGGACAA CGACAAGAAC CAGACGACCA TTGCCGATCC CGCCAAGAAC TGGCGCAATG ACATCATGGG TGATGCCCTT CACTCTAAGC CTCTGGCATT GAACTTTGGC AGTAAGTCTA GCCCGGATAT ACGTATCCTG GTTGGTACCA ACCATGGCTT CATGCATATG TTCAAGGATG ACACCACTGC CAACGAGGTT AGCGAGAGCT GGGCCTTCAT GCCTTATGAA CTGCTGCCAA ATATCCAGAC CCTGAGAAAC AATGTGCCGA CGGGCGTGCA CTCAGTCTAT GGTATCGACG GCTCTCCTGT TGCCTATGTG AAAAATGGCG CCTCAGGTGT AGAAAAAGCT TGGCTCTTCT TCGGCATGCG TCGCGGTGGT GATAGTTACT ATGCCCTGGA TATCAGCAAC CCTGATTCGC CAAGCTTCAA GTGGCGTATC GATGCCAGCT CGCCGGGCCT GAGTGAGCTT GGACAATCCT GGTCGACACC TGTGGTGACC ACGATTCGCA GTGCCAGCGG CACGGAAAAA CCTGTGCTCA TCTTCGGTGC TGGGTATTCA CCTGCGGGTA AAGATGGTAA AGACCTTGGC ACTAAGGATA ACAAAGGGCG TGGCGTGTTT ATCGTCGATG CCGATACCGG CAAACTGATC CATCAATTTG GCGCCGGTGG CGGCACGGCC CTGCCAGGGA TTCAGGACAG TATTCCTAGC GGTGTGGCGG TACTCGATGC CAGTGGCGAT GGCAATACCG ACCGTATCTA TGCGGTCGAT ACCGGTGGTA GTGTCTGGCG CATGGATATG CCAAGGGCGG ATAAGGCTAG CTGGTCAGCC TTTAAGTTTG CCGATCTAGG TGGCAAGTCG CTGCTGCAGA ATCGTCGCTT CTACTCGGCC CCAGTTGTGG CGCAGACCAT GATTAACAAT GTCTCAGTGG TTGATTATAC AGTCAATGGC AAGACTACTA GGGTAACCAC GAGTCAGAAT GTACCTTACG ATGCCGTGGT GGTGGGCAGT GGCCACAGGG CGGCGCCGTC CGATACCTCC CGCGAAGACA TGTTTTTCAC CCTACAAGAT AGAAACGTGG TGACTCAGAC CTTCGGCGGC ACGGGCAGGC CTAAGGCGCC AGCGCCTTTG ACTCTTAGCG ACCTCTACGA AACGACCAAG TTGAAGGCTA ATCAAGCGCC CGACAAGATT GCTATTAGTA AGAAGCGCGG GTGGTATTTT AAACTTCCTG GGCTTGGTGA GAAGAATCTG TCACCGGCGA CTATCATTAA CGGTCAGGTG TTCTTCACGA CCTTTGTGCC GGGTACAGCA GCGAGTAACA ACCAGTGCTT AACGTCAGGC ATGGGCTTCC TCTATCCCTT TAATCTGCAC TATGGCACGA GTAACTACAC GTCGGTCGCT CTAGAGGCGG GTAACTTGGT ATTAGACACT CCTCAGCTTG TGATCCCTGC CGACAACAAG GGGGGGCAAG GAAAGGATGG TGATGCCTAC ATGTATCTGA TCGGCATAGG TAACGCCGCC GAGAAGATGG AGAAGGTTAA ACCCGACGAC GATTGCCCCG CCGGGGACAA TCGCTGCATA GGTGGCCGAC TGCGTGCTCA TAAGATCTAC TACTATAGCG AGTAG
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Protein sequence | MDILRAGQSA LANIIMQRKG ELVKSFVALL TAIMSLLSAS SWADDTELYV YEASARTGAR PQILIIFDNS GSMSTKVYDV DKPYTPGAGG GSRYNNGKKG MLYYVKGDQG KNKLPDPDDP NERRKFSGTI NSCGSSWEFL NDYGIFTGFF RKYTFSGANG AWREFGDNNG LNAKAVDCYE DIQEGNYLNA KGLTSGLPVD SLGSPTTPIM YNNVSSSSSD SIKKTAKEQA QLTGFGTGRV LTVYTEDYLR WHHNANKKQE DKTRLELAKD AIKNVILTTP GVDFGLAIFN MNGPDDTLYN GRNGGRIIKA IQTLTPGQKK TLLSGVKDIE YGWNTPLCET LYEAYRYFAG KSVEFGDDDK DYTYESWGRW VTYRANKNDS LDKDALVKGT NTYQSPFKKC QNNAYIVFIT DGEPTLDSAA DVEVTKLTGG VDKHSTSYMS ALSSWMYRKD VNPNMDGDQH VITHTIGFSE GAKNAEDLLK KVASKGGGSY FDATDATKLQ GSIQQAVNEV LANSASFTSP SVASNNFNRT QTFNYAYYSM FLPDRGPRWT GNIKKFRVAA DGTVLDAEGK IALGDDGNIK DSACSYWTPK KLCGDGNDVR KGGVLSAMQS ADSRTLYSNL GGGMDTLSLS AAATKAGGQE DLANFMGVDK SQLTNLFDWA KGLDVDNDKN QTTIADPAKN WRNDIMGDAL HSKPLALNFG SKSSPDIRIL VGTNHGFMHM FKDDTTANEV SESWAFMPYE LLPNIQTLRN NVPTGVHSVY GIDGSPVAYV KNGASGVEKA WLFFGMRRGG DSYYALDISN PDSPSFKWRI DASSPGLSEL GQSWSTPVVT TIRSASGTEK PVLIFGAGYS PAGKDGKDLG TKDNKGRGVF IVDADTGKLI HQFGAGGGTA LPGIQDSIPS GVAVLDASGD GNTDRIYAVD TGGSVWRMDM PRADKASWSA FKFADLGGKS LLQNRRFYSA PVVAQTMINN VSVVDYTVNG KTTRVTTSQN VPYDAVVVGS GHRAAPSDTS REDMFFTLQD RNVVTQTFGG TGRPKAPAPL TLSDLYETTK LKANQAPDKI AISKKRGWYF KLPGLGEKNL SPATIINGQV FFTTFVPGTA ASNNQCLTSG MGFLYPFNLH YGTSNYTSVA LEAGNLVLDT PQLVIPADNK GGQGKDGDAY MYLIGIGNAA EKMEKVKPDD DCPAGDNRCI GGRLRAHKIY YYSE
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