Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1152 |
Symbol | |
ID | 4921087 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1325882 |
End bp | 1326706 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640162687 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_001093282 |
Protein GI | 127512085 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0163398 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0148083 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAATT TGGATAAATA TATCGAGCAA GCGCCTGAGC TGATCCTGAC CTATGGTCTG CAGGTGGTCT TCGCCATAAT CATCTTTATT ATTGGTAAGT ACCTGGCCAA TGTGGCTAAG AAGCTTACCA CTAAGTTGAT GAATAAGCGT AAGATCGACA AGACTGTGGT CTCTTTCGTG GCTAACATGG CCTGGGCTTT GGTGTTTGTC TTCACTGTGA TCGCCACGCT TGGGCAGATC GGTGTTCAGA CGGCTTCTCT AGTTGCCGTT ATCGGTGCCG CCGGTTTGGC CGTTGGTCTG GCGCTGCAGG GCTCGCTGTC TAACTTCGCC TCTGGCGTGC TTATGGTGCT CTTCCGTCCT TGCCGCGTAG GCGACTACAT CGAGGCGGCG GGTATCGCGG GTACGGTCGA TGAGATCACC ATCTTCTCGA CTAAGCTGCG CACCCCTGAT AACAAGGTGA TTGTGGCGCC TAACTCATCA ATCATGAACG GTACCATCAC CAACTACTCA GCCATGGAAA CCCGTCGTAT CGACTTGGTT ATCGGCGTGT CTTACGATGC CGACCTTAAG CAGACCAAGG AAGTGCTTAA GCAGGTATTG GACAACAACG CCTACATTTT GAAAGATCCT GCCTACACAG TGGCACTGAC CGAGCTGGCG GACTCTTCGG TTAACTTCGT GGTACGTCCT TGGGTCAAGG GTAGCGACTA CTGGCCGGCC CGTTTCGAGA TCCTAGAGCA GATCAAGCTG GCGCTGGACG AGAACAATAT CGGTATCCCA TATCCACAGA TGGATATCTA TGTCAAAGAG ACGCCAGCGG CTTAA
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Protein sequence | MENLDKYIEQ APELILTYGL QVVFAIIIFI IGKYLANVAK KLTTKLMNKR KIDKTVVSFV ANMAWALVFV FTVIATLGQI GVQTASLVAV IGAAGLAVGL ALQGSLSNFA SGVLMVLFRP CRVGDYIEAA GIAGTVDEIT IFSTKLRTPD NKVIVAPNSS IMNGTITNYS AMETRRIDLV IGVSYDADLK QTKEVLKQVL DNNAYILKDP AYTVALTELA DSSVNFVVRP WVKGSDYWPA RFEILEQIKL ALDENNIGIP YPQMDIYVKE TPAA
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