| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1098 |
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| Symbol | |
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| ID | 4923448 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1266103 |
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| End bp | 1267038 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640162631 |
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| Product | riboflavin biosynthesis protein RibF |
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| Protein accession | YP_001093228 |
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| Protein GI | 127512031 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0196] FAD synthase |
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| TIGRFAM ID | [TIGR00083] riboflavin kinase/FMN adenylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0105422 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.148942 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACTGA TCCGCGGTAT ACATAATATT TTACCCAGAC ACCAGGGTTG CGTGCTGACT
ATTGGGAACT TTGACGGCGT GCATCGTGGG CATGCCGAAG TCATTGCTGC CCTTGTAAAA
AAAGCCAAGC AACATGGGGT TCCTGCAACA CTCATGACAT TCGAACCTCA GCCGCAAGAG
TTGTTTAAGG GGGATAATGC CCCGGCCAGG CTGAGTTTGC TGCGCGATAA GATCGTCTTG
CTCGATGAGC TGGGCATAGA TCGTCTGCTG TGCGTCAATT TTAATCAGAA GTTTGCCGCC
ATGCCGGCAG AAGCCTTTAT CGAGGATCTC CTGGTAAAAC AGCTAGGAGT GAAATACCTG
GTGGTGGGGG ATGACTTCTG TTTTGGCAAG CAGCGCCGCG GTAATTTTGA GATGTTAAAG
GCCGCCGGTG AAAAATATGG TTTCGCCGTG GTCAATACCC ATAGCTTTAT CCTAGGGGAT
AAACGGGTGA GCTCCACAGA GATTCGTGGG CTGCTCGCCA AGGGGAACCT AGAGCAGGCA
AGGCGCCTGC TCGGCCATCC ATATGCCCTG AGCGGTAAGG TTGCCCATGG TGAGAAAATC
GGCCGCACCA TAGGTTTCCC CACTGCCAAT ATCGCCTTGA AACGTAAGGT GTCGCCGGTC
AGGGGCGTCT TTGCCGTCAA GCTGTATTGG GACGGAAGCG ATATCTATGA AGGGGTGGCC
AACGTCGGCT TTAGGCCCAC GGTCAACGGA CAAAATTGTC AGTTAGAAGT CCATCTGTTT
GATTTTGAAG GAGACCTGTA TGGTCGCACC GTCGAAGTCG AGTTGGTGGC AAAGATTAGG
GATGAACAGC CATTTAAGTC TTTAGATGCG CTGAAGCTAC AAATTAAAGA TGATGCTGAC
AGGGCCAAGG CCCTGCTTGG CTGCGATGCA GGCTGA
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| Protein sequence | MELIRGIHNI LPRHQGCVLT IGNFDGVHRG HAEVIAALVK KAKQHGVPAT LMTFEPQPQE
LFKGDNAPAR LSLLRDKIVL LDELGIDRLL CVNFNQKFAA MPAEAFIEDL LVKQLGVKYL
VVGDDFCFGK QRRGNFEMLK AAGEKYGFAV VNTHSFILGD KRVSSTEIRG LLAKGNLEQA
RRLLGHPYAL SGKVAHGEKI GRTIGFPTAN IALKRKVSPV RGVFAVKLYW DGSDIYEGVA
NVGFRPTVNG QNCQLEVHLF DFEGDLYGRT VEVELVAKIR DEQPFKSLDA LKLQIKDDAD
RAKALLGCDA G
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