| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1094 |
|---|
| Symbol | |
|---|
| ID | 4923964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1261904 |
|---|
| End bp | 1263310 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640162627 |
|---|
| Product | peptidase M28 |
|---|
| Protein accession | YP_001093224 |
|---|
| Protein GI | 127512027 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2234] Predicted aminopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000099485 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0169877 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGCT CCCCTCTCAT CCTCCTATCC ACACTCTTTT TCGGCGGCCT ATTTGCCTGT
CAAAATGCGG CAGCAACAGA CACAAATCAA AGTGTTAGTG CCAAGCTACA GCAGCAAGCA
CTCTCTTCGA GCCTGGCCTA TGATATTGTC GAATCACTCA CGGTCGAAGT AGGCCCTAGA
CTCGCCGGCA GCGACAAAGA CTTGGTCGCC GTAGAGTGGG CCGAGAAGAA GCTGGGCTCC
CTCGGTTTTG ATAAGGTCTA TAAAGAAGCC GTGCAGGTGC CCGTATGGCA ACGAGGCGAG
GCCAAGGCCA ATATAGTCTC CCCTTACGCC CAACCTTTGG TGATCACCGC CCTAGGTGGC
AGCGTCGGCA CGCCGGAAGA AGGGATCAGT GCGCCAATCG TCCGCTTCGA GACCCTAGAC
GAACTAAAAC AAGCCGATCC AAGCCTGGTT GCGGGCAAGA TCGTCTTTAT CGACCACATC
ACCCCTAGAT TTAAGACGGG TAAAGGCTAT GGCATGACAG TTGGCGGACG CTCACGGGGC
GCCATCGCCG CTGCAGAGAA AGGCGCGCTA GCCATAGTGA TCCGCTCCAT CGGCACAGAC
CATGACAGAA TGGCCCATAC CGGCATGATG CGCTATCAAG AAGGGGTAGA TAAGATCCCG
GCTGCGGCCA TGTCCAATCC CGATGCAGAC TTGGTCACCC TGATGCTTAA GCGCGATCCC
AACGTCGTGC TGCATCTCGA GATGAGCCCT AAGAACCTTG GCTACGCCAC ATCCTATAAT
GTCATTGCCG AGGTTACCGG CAGCAGCAAA CCCGATGAGA TAGTGCTTAT CGGCGCGCAC
CTGGATTCTT GGGATGAAGG CACTGGCGCC ATCGATGACG GAGCAGGCGT GGCCATTGTG
ACCGCCGCAG GCCACTACAT CTCTCAGCTA CCCGTTAAAC CTGCCCGCAC GGTTCGCGTG
GTGCTCTACG CCGCCGAAGA GCTGGGGTTA ATTGGCGGCA AGAGCTACGC CAAAGACCAT
CAAGCGGAGC TGGCCAAACA CTATATAGCC GCCGAATCCG ACTTTGGCGC CGGGCGTATC
TACCAGATCG ACTTTAACGT TGCCGATAAG GCCTTTGCCG CCGTGCAGGC TCATACCGGC
TCGATGCAGG ATAATGGTGT TGCGCCAGGC AATAACAAGG CCTCTGGTGG CCCTGACGTC
TCCATGCTGC CAGGCTATGG CGTACCCGTG GCGTCACTCA GACAAGATGG CAGCGACTAT
TTCGACTATC ACCACACGCC AAACGATACC TTGGATAAGA TCGATCCTGA GGCGCTGGCA
CAAAATGCGG CGGCCTACGC CCAGTTTGCT TACCTCATGG CGCAATCTGA TATTGAGTTA
AGACCGCTAA CCCCTAAGGC CAAATAG
|
|---|
| Protein sequence | MKSSPLILLS TLFFGGLFAC QNAAATDTNQ SVSAKLQQQA LSSSLAYDIV ESLTVEVGPR
LAGSDKDLVA VEWAEKKLGS LGFDKVYKEA VQVPVWQRGE AKANIVSPYA QPLVITALGG
SVGTPEEGIS APIVRFETLD ELKQADPSLV AGKIVFIDHI TPRFKTGKGY GMTVGGRSRG
AIAAAEKGAL AIVIRSIGTD HDRMAHTGMM RYQEGVDKIP AAAMSNPDAD LVTLMLKRDP
NVVLHLEMSP KNLGYATSYN VIAEVTGSSK PDEIVLIGAH LDSWDEGTGA IDDGAGVAIV
TAAGHYISQL PVKPARTVRV VLYAAEELGL IGGKSYAKDH QAELAKHYIA AESDFGAGRI
YQIDFNVADK AFAAVQAHTG SMQDNGVAPG NNKASGGPDV SMLPGYGVPV ASLRQDGSDY
FDYHHTPNDT LDKIDPEALA QNAAAYAQFA YLMAQSDIEL RPLTPKAK
|
|---|
| |