| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1092 |
|---|
| Symbol | |
|---|
| ID | 4923060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1259341 |
|---|
| End bp | 1260819 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640162625 |
|---|
| Product | amino acid carrier protein |
|---|
| Protein accession | YP_001093222 |
|---|
| Protein GI | 127512025 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1115] Na+/alanine symporter |
|---|
| TIGRFAM ID | [TIGR00835] amino acid carrier protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000531923 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0424482 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAAT CTGTATTAAA TTTAGTCGAT TCGACTATCA ACGCGGTAAA CGGCATGCTG
TGGGGCAGTG TGTTGATTTA CGTGCTGGTC GCTGCGGGCG TGTTGTTTAC ATTGAGATTG
GGCTTTATCC AATTACGTAT GTTTGGTCAT GGTAGCAAGT TAGTGCTGCA GGGCCGTGAG
AAAACCAATG GTATTTCGTC GTTCCAGGTA TTTTGTACCT CTATGGCGGC CCGTGTGGGC
ACGGGTAACA TGGCTGGTGT TGCGGTAGCA ATTACAGTCG GTGGCGCCGG CGCCGTGTTC
TGGATGTGGC TCATCGCCCT GCTTGGGATG GCAACCGCCT TTATCGAGTC GACCCTGGCG
CAAGTATACA AGGTTAAAGA CAGCGACGGT CAGTACCGTG GTGGCCCGGC CTATTATATG
GAGCAAGGGC TAGGCAAGCG CTGGATGGGT TCTTTGTTCT CTGTCTTGTT GATCATCGCC
TTCGGTTTCG CCTTCAATGC GGCCCAGGCC AATACCATGA CTGATGCACT CAATAATGCC
TTTGGGTTAG ATAAGACTAT GGTGGGTCTG GTGATTGTCG CCGTTGCGGC CTATATCATC
AGCGGCGGTC TGAAGAAAGT GGCCAAGGCC TCTGAGCTTA TCGTGCCTGT GATGGCGGTG
GCTTATCTGG CGATTGCCCT GATCGTTCTG GTAATGAACC TTGAGCAGGT GCCTGCGGCG
CTGGCTTATA TCGTCAAGAG TGCCTTCGGT TGGGAAGAAG CCGCCGGCGG CGCCATGGGC
GCCATGATGG CGGGTATCGC AAGAGGATTG TTCTCTAACG AAGCGGGTAT GGGCAGTGCG
GCCAATATTG CGGCATCAGC ATCACCAAAT CCTAATCACC CCGCCTCTCA GGGCTTCGTG
CAGATGATTG GCGTGTTTGT CGATACCATA GTGATCTGTA GCGCTACCGC AGCCATCATC
TTGTTATCGG GCGTACTGGA TGCACCGGGT GAACAGAAGG GTATAGGTCT GTTGCAGTTA
GCGCTCACCA ACGAGGTGGG TGGATGGGCT GCCTATTTTG TCGCCTTCGC TATCATTCTC
TTCTGCTTCT CTTCTATCAT CGCTAACTAC AGCTATGCAG AGAGCAATAT CATGTTCCTG
AGTCGGAGCA AGAAGGTGCT CTATATCTTC CGCGCCTTGG TTTTGGCCAT GGTGATGGCG
GGGTCAGTGG CGTCTCTGCA GTTGGTGTGG AACTTTGCCG ATGTCTCGAT GGGCTTGATG
GCGCTGGTGA ATATTGCCGC CATCGTCATG CTCTCTAAGG TGGCCTTTGC GGTGATCAAA
GATTACGAAG TGCAGTTAAA GGCTGGTAAG GTGCCGACAT TCGATGCGGC GCATTTCCCT
GAGCTTAACG GTCTGGATGA GAAGATCTGG AAGGGTAAGC CCAGCGCCGA TGCCTTGGCG
AAAGAAGAAG GCAAGTCGAT TGCCGTCCCC GAGGTGTAA
|
|---|
| Protein sequence | MFESVLNLVD STINAVNGML WGSVLIYVLV AAGVLFTLRL GFIQLRMFGH GSKLVLQGRE
KTNGISSFQV FCTSMAARVG TGNMAGVAVA ITVGGAGAVF WMWLIALLGM ATAFIESTLA
QVYKVKDSDG QYRGGPAYYM EQGLGKRWMG SLFSVLLIIA FGFAFNAAQA NTMTDALNNA
FGLDKTMVGL VIVAVAAYII SGGLKKVAKA SELIVPVMAV AYLAIALIVL VMNLEQVPAA
LAYIVKSAFG WEEAAGGAMG AMMAGIARGL FSNEAGMGSA ANIAASASPN PNHPASQGFV
QMIGVFVDTI VICSATAAII LLSGVLDAPG EQKGIGLLQL ALTNEVGGWA AYFVAFAIIL
FCFSSIIANY SYAESNIMFL SRSKKVLYIF RALVLAMVMA GSVASLQLVW NFADVSMGLM
ALVNIAAIVM LSKVAFAVIK DYEVQLKAGK VPTFDAAHFP ELNGLDEKIW KGKPSADALA
KEEGKSIAVP EV
|
|---|
| |