Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1088 |
Symbol | pgi |
ID | 4923575 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1252316 |
End bp | 1253953 |
Gene Length | 1638 bp |
Protein Length | 545 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640162621 |
Product | glucose-6-phosphate isomerase |
Protein accession | YP_001093218 |
Protein GI | 127512021 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0166] Glucose-6-phosphate isomerase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000310593 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0429778 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTAAGC TTACTCAGCA AGACGCATGG GCCCAGCTCG AGGCACAAGC CGCGAAGCTG CCACACATGC GCGAGCTATT TGAGGCCGAT CCCCAGCGCT TTGACAAGAT GTCACTGTCC GCCTGCGGCC TGCTGCTGGA CTACTCCAAG AACCGGGCGG ATGAGCAGAC GCTTGAGCAG CTGTTTAAAC TGGCTAAATC TGCCGGTCTA AGCGATAAGA TCCACGCCAT GTTCGATGGC GAGATCATCA ACAACACCGA AAAGCGCGCC GTGCTGCACA CGGCCCTCAG AGCCGAGGCC GACGAGGTTA TTTTGGTCGA TGGCCAGAAT ATCGTTCCCG AGGTAAAACA GACTCAGGCC AAGATGGCCA AATTTGTCGA GGCAGTCACC TCTGGCGAGT GGAAGGGCTA CACGGGCAAG GCGATCACAG ATATCGTGAG CATAGGCATT GGTGGCTCCT TCCTGGGCCC TAAGATAGTT ACTCAGGCCC TGAGACCATA CTGGAATCCG GCGCTCAAGT GTCACTTTGT CGCCAACGTC GATGCCACCT CACTGTGTGA GAAGCTGCGT CTGGTGGATC CGGAAACCAC ACTATTCGTG ATGTCGTCTA AGTCTTTTGG CACCCAAGAG ACGCTGACCA ACACCCTGAG TGCCAAGGCC TGGTTCCTGA AAAATGGCGG TACCCAAGTA GACATCGCCA AGCATTTCGT TGCCGTCACC TCAAACGTGG CCAAGGCGAC CGAATTCGGC ATGGATGCGG ACAACATCTT CCCTATGTGG GATTGGGTGG GCGGTCGTTA TTCACTCTGG TCGGCCATAG GTCTGCCTAT CGCCCTGTTG ATCGGTATGG ATAACTTCTA CCAGCTGCTG GCGGGCGCCA AGTCGATGGA CAAGCATTTT GTCGAGGCAC CGCTCGAACA GAATATGCCG GTGATCATGG GGCTGTTTTC CCTGCTCTAT GGCAACTTCT ACCAGGCGCA GTCCCATGTG GTATTGACCT ATGATCATTA CCTCAGAGGC CTGCCGGCGT ACTTCCAACA GCTGGACATG GAGAGTAACG GTAAATCTGT CACCCTCAAT GGCGACAACG TCGACCATGC AACCGGCCCT GTGATCTGGG GCGGCGAAGG CACCAATGGT CAACACGCCT ATCACCAGTT GTTACACCAA GGCACGGCAC TGATCCCGGC AGACTTTATT CTGCCACTGC AGAGCCATAA CCCGCTCGGC GAACATCATG TGCAGCTGGC CTCCAACTGT TTTGGCCAGA CTCAGGCACT GATGCAAGGC AGAACCTTCG ATGAGGCACT CGCCGAACTC GACGGCAGCT CACAGAGCCA GGAAGAGAAG GCACTGATCG CTAAGCACAA GGTGATGGAA GGCAATAAGC CAAGCAACAC CCTGCTGATG GACAAGCTGA CTCCGGAAAC TCTGGGTGCC TTGATCGCCC TGTACGAGCA TAGAACCTTC GTTCAAGGCG CGATATGGGA CATCAACTCC TTCGACCAAT GGGGCGTCGA ACTGGGCAAG ACCCTAGGCA ACGATGTGCT CGCACGTCTG CAGAGCGATG AAGAGGCTAA GGCGCTAGAC GCCTCCAGCA ACGCCCTCAT CAATCTCTTT AGACGCGGCC ACCTTTAA
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Protein sequence | MTKLTQQDAW AQLEAQAAKL PHMRELFEAD PQRFDKMSLS ACGLLLDYSK NRADEQTLEQ LFKLAKSAGL SDKIHAMFDG EIINNTEKRA VLHTALRAEA DEVILVDGQN IVPEVKQTQA KMAKFVEAVT SGEWKGYTGK AITDIVSIGI GGSFLGPKIV TQALRPYWNP ALKCHFVANV DATSLCEKLR LVDPETTLFV MSSKSFGTQE TLTNTLSAKA WFLKNGGTQV DIAKHFVAVT SNVAKATEFG MDADNIFPMW DWVGGRYSLW SAIGLPIALL IGMDNFYQLL AGAKSMDKHF VEAPLEQNMP VIMGLFSLLY GNFYQAQSHV VLTYDHYLRG LPAYFQQLDM ESNGKSVTLN GDNVDHATGP VIWGGEGTNG QHAYHQLLHQ GTALIPADFI LPLQSHNPLG EHHVQLASNC FGQTQALMQG RTFDEALAEL DGSSQSQEEK ALIAKHKVME GNKPSNTLLM DKLTPETLGA LIALYEHRTF VQGAIWDINS FDQWGVELGK TLGNDVLARL QSDEEAKALD ASSNALINLF RRGHL
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