| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1083 |
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| Symbol | |
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| ID | 4922776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1247062 |
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| End bp | 1247913 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162616 |
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| Product | apurinic endonuclease Apn1 |
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| Protein accession | YP_001093213 |
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| Protein GI | 127512016 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0648] Endonuclease IV |
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| TIGRFAM ID | [TIGR00587] apurinic endonuclease (APN1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0228384 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0872132 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGACA CTCATTGGGT CGGTGCCCAT GTTAGCGCCG CCGGCGGTAT CGCCAACGCG
CCGCTGAACG CACAGAAGAT AGGTGCCAAT GCCTTCGCGC TGTTCACCAA GAATCAGAGA
CGCTGGCAGT CAGCACCGCT CTGCCCTTCG CAGATTGATG CCTTCAAGGC CAACTGCGAG
CAGGCCAACA TTCACCCCGA TGCCATTCTG CCCCACGACA GCTACCTGAT TAATCTTGGC
CACCCAGATG AGGAGCAGCT AGCGCGCTCG CGAGAAGCCT TTCTCGACGA GATGCAGCGC
TGCGAACAGA TGGGATTGAC CCTGCTCAAC TTTCATCCCG GCAGTCATCT CAACAAGATA
GGCATAGACG AGTGCCTGGC CCGCATCAGC GAATCGATCA ACCTAGCACT GGACAAGACC
CAAGGCGTCA GCGCCATCAT AGAAAACACC GCAGGCCAGG GGTCAAACCT GGGCCATAGC
TTCGAGCAGC TGGCACAGAT CATCGACAAA GTAGAAGATA AGAGCCGGGT CGGTGTCTGT
ATCGACACCT GCCACATGTT TGCCGCCGGC TACGATTTAA CCACTCTCGA GGCCTGCGAG
GAGAGCTTCG GCCAATTTGA TGCCATAGTG GGTAACCATT ACCTTAAGGC GATGCACCTC
AACGACAGCA AGACACCGCT TAATAGCCGG GTCGACAGGC ACCACTCCCT CGGCGCCGGT
TATATCGGTA TGGATGCCTT TAGCTATATC ATGAAACATC CGGCGACCAG GCAGATCCCC
CTCATATTAG AAACGATAGA ACCTGAGATC TGGCCCCAAG AGATCAACTG GCTACGTAGC
CAGACACGCT AA
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| Protein sequence | MPDTHWVGAH VSAAGGIANA PLNAQKIGAN AFALFTKNQR RWQSAPLCPS QIDAFKANCE
QANIHPDAIL PHDSYLINLG HPDEEQLARS REAFLDEMQR CEQMGLTLLN FHPGSHLNKI
GIDECLARIS ESINLALDKT QGVSAIIENT AGQGSNLGHS FEQLAQIIDK VEDKSRVGVC
IDTCHMFAAG YDLTTLEACE ESFGQFDAIV GNHYLKAMHL NDSKTPLNSR VDRHHSLGAG
YIGMDAFSYI MKHPATRQIP LILETIEPEI WPQEINWLRS QTR
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