| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1067 |
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| Symbol | |
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| ID | 4920576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1228034 |
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| End bp | 1229125 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162600 |
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| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
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| Protein accession | YP_001093197 |
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| Protein GI | 127512000 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
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| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000238391 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCAAG ACACGATAAA TAATGTTCAC ATCAGCTCGG AGAAAGTGCT GGTGACCCCG
GAAGAGTTAA AACAACAACT GCCCCTGTCG ACTGCCGCCT ATCACTATGT GCTTAACGCG
CGCCGCACTG TATCGGATAT CGTCCATAAG CGTGATAACC GCGTGCTGGT GGTCAGCGGT
CCCTGTTCTA TCCACGACAT CGCCTCGGCC AAAGAGTACG CGCTGCGCCT CAAGACGCTG
CACGACGAGC TTAAAGATGA GTTCTACATC CTGATGCGGG TCTACTTCGA GAAGCCACGT
ACTACCGTGG GCTGGAAGGG GATGATCAAC GATCCCGATA TGGATGAGTC TTTCGATGTG
GAGAAGGGGC TGCGTCAGGC GCGCGAGTTG ATGATCTGGC TGGCGGAGCT GGGACTGCCG
GTGGCGACCG AGGCGCTGGA TCCTATCAGC CCGCAATACA TCTCCGAGCT GGTCACCTGG
TCGGCCATCG GTGCGCGCAC CACAGAATCT CAGACCCACA GGGAGATGGC GTCCGGTCTC
TCCATGCCTG TGGGCTTCAA GAATGGTACC GACGGCAAGC TGGGGGTGGC GATCAACGCG
CTGCAATCGG CGGCCAGCAG CCACAGATTC ATGGGGATCA ACCAGGCGGG TCAGGTAGCG
CTGCTACAGA CCGCGGGTAA CCCAGATGGC CACGTGATCC TGCGCGGCGG CAAGACTCCT
AACTATGACG CTTCGAGCGT GGCCGAGTGT GAGCAGCAGC TGCATGCGGC CAAGCTTAAC
GCCCGCTTGG TGGTGGATTG CAGCCACGGC AACTCGAGTA AAGATCACAC CCGCCAGCCG
AGCGTCTGTC AGGATGTGTT CGATCAGATA GCCAATGGCA ACAAGTCGAT CATAGGCGTC
ATGCTGGAGA GTCATCTGAA CGAAGGTAAT CAGAGCAGCG ACAAGCCGAT GAGTGAGTTG
GCCTACGGGG TGTCGGTAAC CGATGCCTGC ATCGACTGGC AGACCACGGA AGATCTTCTA
CGTCAGGGGG CGGCACAATT GGCATCGGTT TTACCAGGCA GATTTGCTAT GCTCAAGGCG
GTCAATGCCT GA
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| Protein sequence | MQQDTINNVH ISSEKVLVTP EELKQQLPLS TAAYHYVLNA RRTVSDIVHK RDNRVLVVSG
PCSIHDIASA KEYALRLKTL HDELKDEFYI LMRVYFEKPR TTVGWKGMIN DPDMDESFDV
EKGLRQAREL MIWLAELGLP VATEALDPIS PQYISELVTW SAIGARTTES QTHREMASGL
SMPVGFKNGT DGKLGVAINA LQSAASSHRF MGINQAGQVA LLQTAGNPDG HVILRGGKTP
NYDASSVAEC EQQLHAAKLN ARLVVDCSHG NSSKDHTRQP SVCQDVFDQI ANGNKSIIGV
MLESHLNEGN QSSDKPMSEL AYGVSVTDAC IDWQTTEDLL RQGAAQLASV LPGRFAMLKA
VNA
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