Gene Shew_1063 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1063 
SymbolrpsP 
ID4922775 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1225680 
End bp1225931 
Gene Length252 bp 
Protein Length83 aa 
Translation table11 
GC content48% 
IMG OID640162596 
Product30S ribosomal protein S16 
Protein accessionYP_001093193 
Protein GI127511996 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0228] Ribosomal protein S16 
TIGRFAM ID[TIGR00002] ribosomal protein S16 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000183798 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTACCA TTCGTTTAGC TCGAGGCGGC GCAAAAAAGC GTCCATTCTA TAACATCGTT 
GTTGCTGACA GCCGTAACGC TCGTGACGGT CGTTTCATCG AACGTGTTGG CTTCTTCAAC
CCTGTTGCTC GTGGTCAAGA AGAAGCTCTT CGCTTAGATC TTGATCGTGT AGATCACTGG
GTTGCTAACG GTGCTGCTAC TACTGATCGT GTAGCGAAAC TGATCAAAGA CGCTCGTAAA
GCTGCTGCTT AA
 
Protein sequence
MVTIRLARGG AKKRPFYNIV VADSRNARDG RFIERVGFFN PVARGQEEAL RLDLDRVDHW 
VANGAATTDR VAKLIKDARK AAA