| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1062 |
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| Symbol | |
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| ID | 4922416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1224101 |
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| End bp | 1225474 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162595 |
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| Product | signal recognition particle protein |
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| Protein accession | YP_001093192 |
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| Protein GI | 127511995 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0541] Signal recognition particle GTPase |
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| TIGRFAM ID | [TIGR00959] signal recognition particle protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0147174 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGAGA ACCTCACCGA CAGATTATCA CGCACCCTGA AAAATATTAG CGGTCGTGGT
CGCCTTACAG AAGACAATAT TAAAGAAACG TTACGCGAAG TGCGTATGGC GCTGCTGGAA
GCCGACGTCG CCTTGCCCGT TGTTCGTGCC TTTGTTAACA GCGTTAAAGA TCGCGCCGTA
GGCCAAGAGG TCACCAAGAG CCTGAGCCCA GGCCAGGCCT TCATCAAGAT CGTCCAGAGT
GAGCTTGAAA ATGCCATGGG CGAAGCCAAC GAGGCGCTAA ACCTCTCGGC GCAGCCGCCA
GCGGTGATCA TGATGGCCGG TCTGCAAGGT GCGGGTAAGA CCACCAGTGT TGCCAAGCTG
TCTAAGTTCC TGCGTGAAAG ACAGAAGAAA TCTGTATTGG TGGTCAGCGC CGACGTCTAT
CGTCCGGCGG CGATCAAGCA GCTGGAAACC TTGGCCAATG AGGTCGAGGT CGAGTTCTTC
CCATCGGATG TATCGCAAAA GCCTATCGAC ATCGTCGATG CGGCCATGGC TCACGCCAAG
CTTAAGTTTA TCGACGTGGT GATCGTCGAT ACCGCGGGTC GCCTGCACGT CGACGAGAGC
ATGATGGACG AGATCAAGGC GCTGCACGCC GCGGTCAAAC CGGTAGAAAC CCTGTTTGTG
GTCGATGCCA TGACGGGTCA GGATGCGGCC AACACAGCCA AGGCCTTCAA CGAAGCCCTG
CCGCTGACCG GTGTGGTACT GACCAAGGTC GACGGTGATG CCCGTGGTGG TGCTGCGCTG
TCGATTCGCC ATATTACCGG TAAGCCGATC AAGTTCCTGG GTGTGGGCGA GAAGACAGAT
GCTCTCGAGC CTTTCCATCC GGACCGTGTT GCCTCGCGCA TTCTGGGCAT GGGCGATGTG
CTTTCCCTGA TCGAAGAGGT TGAGCGCGGC GTCGATAAAG AGAAGGCGAT GAAGCTGGCC
TCTAAGGTCA AGCAAGGCGG TAGCTTCGAT TTAGAAGACT TCCGTGAGCA GCTACAACAG
ATGAAGAACA TGGGCGGCAT GATGAGCATG CTCGAGAAGC TGCCCGGTGT CGGTCAACTC
CCCCCAGAAG CCCTGGCTCA GGTGCAAGAC GGCAAGCTAA CGGGACAAAT GGAGGCTATT
ATTAACTCCA TGACCCCAGG CGAGCGTAAG CGCCCAGAGA TCATCAAGGG GTCTCGAAAG
CGTCGTATCG CCATGGGTTC AGGTACCCAG ATCCAGGACG TCAATCGTCT GCTCAAGCAG
TTCACTCAGA TGCAGAAGAT GATGAAGAAG ATGTCGGGTA AAGGCGGCAT GAAGAAGATG
ATGCGCGGCA TGAGTGGAAT GCTGCCTCCC GGGATGAAGA TGCCGGGACG TTAA
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| Protein sequence | MFENLTDRLS RTLKNISGRG RLTEDNIKET LREVRMALLE ADVALPVVRA FVNSVKDRAV
GQEVTKSLSP GQAFIKIVQS ELENAMGEAN EALNLSAQPP AVIMMAGLQG AGKTTSVAKL
SKFLRERQKK SVLVVSADVY RPAAIKQLET LANEVEVEFF PSDVSQKPID IVDAAMAHAK
LKFIDVVIVD TAGRLHVDES MMDEIKALHA AVKPVETLFV VDAMTGQDAA NTAKAFNEAL
PLTGVVLTKV DGDARGGAAL SIRHITGKPI KFLGVGEKTD ALEPFHPDRV ASRILGMGDV
LSLIEEVERG VDKEKAMKLA SKVKQGGSFD LEDFREQLQQ MKNMGGMMSM LEKLPGVGQL
PPEALAQVQD GKLTGQMEAI INSMTPGERK RPEIIKGSRK RRIAMGSGTQ IQDVNRLLKQ
FTQMQKMMKK MSGKGGMKKM MRGMSGMLPP GMKMPGR
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