| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1060 |
|---|
| Symbol | |
|---|
| ID | 4922049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1221590 |
|---|
| End bp | 1222873 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640162593 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001093190 |
|---|
| Protein GI | 127511993 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4536] Putative Mg2+ and Co2+ transporter CorB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00777196 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGAAGCTA TATCCACCAG CGTACTTGTC ATCATCCTGT TCGTACTCAT CATCATCTCC
GCCTATTTCT CCGGCTCCGA AACCGCCATG ATGTCGCTCA ATCGCTATCG CCTGCGTCAT
CTGGCCAACA ATGGTCATAA GGGCGCGAAA CGCGCCATCA GATTGCTAGA GCGCCCAGAC
AGACTGATCG GCTTGATTCT GATCGGCAAC AACCTGGTGA ACATCCTCGC CTCGGCTATC
GCCACCATAT TGGGGATTCG CTTGTTTGGT GATGTTGGGG TGGCCATCGC CACGGGTGTG
CTCACTCTGG TGGTATTAGT CTTTGCCGAG GTGACGCCAA AAACTGTGGC CGCCCTGCAC
CCTGAGCGTA TCGCCTTTCC ATCGAGCGTA CTGCTCAAAG CCCTGTTGGT GCTGCTCTCG
CCCTTGGTGA AGATAGTTAA CTTTATCACC TCTACCTTCC TGCGCCTGCT GGGCATCCGC
TCGGTGAAGG CCGATGACGC CTTGAGTCAG GAGGAGCTGC GCACAGTTGT GCACGAGGCC
GGCGCCCTGA TCCCCCAGCG CCACCAGGAG ATGCTGCTCT CTATCATGGA TCTGGAAAAG
GTCACGGTCG AGGACATCAT GATCCCGCGC TCGGATCTCT ACGCCATCAA CGTTAACGAC
GACTTTAGCC GCATCAATAA GCAGGTGATT CAGAGTCCCC ACACCCGGGT CCTGCTCTAC
CGCGATAACA TAGACGATGC CGTCGGCTTC GTTCACCTAA GAGACGCCCT GCGCCTGCAA
TCTAAGCAGC AGTTTAGTAA GTCATCCCTG CTGCGGGCGG TAAAAGAGAT CTACTTCATC
CCCGAGGGGA CTCCACTCAA CGTGCAGCTG GCCAACTTCC AGCAGAACAA GGAACGTATC
GGCTTAGTAG TAGACGAGTA TGGGGATATT CAGGGGTTGG TAACGCTGGA AGATATTCTC
GAGGAGATCG TCGGCGACTT TACCACCTCG ATGATCACCA CGCCTAGCGA AGATATCAAC
CAGCAGCAAG ATGGCAGCTT CCTTATCGAC GCCACCATCA ACATCCGCGA TCTCAACAAG
GAGATGGACT GGCACTTCCC CATCGACGGG CCTAAGACGC TCAACGGCCT GATCCTTGAG
TATCTCGAGG AGATCCCCGA GCCTAACACC TCGATGCGTC TCTCGGGCTA CCCGCTTGAG
GTGGTCGAGG TGGCCGACAA CATGGTGAAG ACGGTGCGGG TCATGCCCCA GCACTACAAG
GCGCCTAAGG GCAGTCGCAA CTAG
|
|---|
| Protein sequence | MEAISTSVLV IILFVLIIIS AYFSGSETAM MSLNRYRLRH LANNGHKGAK RAIRLLERPD
RLIGLILIGN NLVNILASAI ATILGIRLFG DVGVAIATGV LTLVVLVFAE VTPKTVAALH
PERIAFPSSV LLKALLVLLS PLVKIVNFIT STFLRLLGIR SVKADDALSQ EELRTVVHEA
GALIPQRHQE MLLSIMDLEK VTVEDIMIPR SDLYAINVND DFSRINKQVI QSPHTRVLLY
RDNIDDAVGF VHLRDALRLQ SKQQFSKSSL LRAVKEIYFI PEGTPLNVQL ANFQQNKERI
GLVVDEYGDI QGLVTLEDIL EEIVGDFTTS MITTPSEDIN QQQDGSFLID ATINIRDLNK
EMDWHFPIDG PKTLNGLILE YLEEIPEPNT SMRLSGYPLE VVEVADNMVK TVRVMPQHYK
APKGSRN
|
|---|
| |