Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1053 |
Symbol | |
ID | 4923026 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1216015 |
End bp | 1216932 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640162586 |
Product | signal peptidase I |
Protein accession | YP_001093183 |
Protein GI | 127511986 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0681] Signal peptidase I |
TIGRFAM ID | [TIGR02227] signal peptidase I, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0413438 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGCTT ATTTTTCCCT TATCCTGGTC TTGGTGACCC TAGGCAGCGG CCTGATCTGG ATGTTCGATG CCTTAGTCTT AGCCCCCAAG CGTCAGCAGA AGCTGGCCAT GGCGCAGGCG GCCAACCAGG AGATTAGCGA AGAGAGCGCC GAAAAAATCG TGCGTGAGTC CGCCATAGTG GAGACCTCGC GTTCTATTTT TCCGGTTATC GCTTTCGTGT TGATCCTACG CTCTTTTATT TATGAGCCTT TCCAAATTCC TTCGGGATCT ATGATGCCAA CCCTGCTGGT GGGCGATTTC ATCCTGGTGG AAAAATTTAG CTATGGGCTG AAAGATCCTG TGTGGCGTAG CAAGCTTATC GAGACGGGCA AGCCACAGCG CGGTGACGTG GCGGTATTTA AATACCCAGA AAACCCACAG ATCGACTACA TCAAGCGTGT CATCGGCCTG CCGGGGGATC GCATCGTCTA TCGTAACAAG GACCTCTATA TTCAGAAAGC CTGCCCAGAG GGGCAGAGCG AGTGTCCTAA GCTAGAGAAG ATAGAGCGTG CCGGCGTCAA CCAGGGCGAA TATACCCAGG ATAATATCCC GCTGCTGCGC TACAAGGAGC AACTGGGCGA TGTGACCCAC GATATCCTGA TCAACCCAGG ACGCGGCGAG CCGACCTCTT ACTATTTCCG CGAGGGTAAC CTGGCGGTGG GCGAGTTTGT TGTGCCTGAA GGTCAGTATT TCATGATGGG TGACAACCGC GACAACAGCA CAGACTCACG CTTCTGGGGC TTCGTGCCCG AGGCCAATCT GGTCGGCAAG GCGGTAGCGA TCTGGATTAG TTTTGAATTT GAGCGTAAGC CGTCGGACTT TTTACCGACT TGGGTACCGA CAGGCGTACG CTTTAACCGT GTAGGCGGAA TTGTGTAG
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Protein sequence | MAAYFSLILV LVTLGSGLIW MFDALVLAPK RQQKLAMAQA ANQEISEESA EKIVRESAIV ETSRSIFPVI AFVLILRSFI YEPFQIPSGS MMPTLLVGDF ILVEKFSYGL KDPVWRSKLI ETGKPQRGDV AVFKYPENPQ IDYIKRVIGL PGDRIVYRNK DLYIQKACPE GQSECPKLEK IERAGVNQGE YTQDNIPLLR YKEQLGDVTH DILINPGRGE PTSYYFREGN LAVGEFVVPE GQYFMMGDNR DNSTDSRFWG FVPEANLVGK AVAIWISFEF ERKPSDFLPT WVPTGVRFNR VGGIV
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