| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1049 |
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| Symbol | |
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| ID | 4922530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1211878 |
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| End bp | 1212480 |
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| Gene Length | 603 bp |
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| Protein Length | 200 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640162582 |
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| Product | anti sigma-E protein, RseA |
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| Protein accession | YP_001093179 |
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| Protein GI | 127511982 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3073] Negative regulator of sigma E activity |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00135611 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATAAGT TAGGTCAGGA ATGGGTTTCC GCTGCCGTTG ATGGTGAAAT CGACGAGCAG
GAGTTGGCGC AACTCGCCGC CGATACGGAT TCGCATGAGA AGTGGCGTGA TTATCACATG
ATAGGTGATG CTATGCGTGG TGAGTTGCCC GCTGCGATCA ATCTTGATCT CAGTGCCAAC
ATTGCCGCAG CAATTGAGCT TGAGCCTAGT ATCCTTGTGC CTAAGCGTGT CGAAACGCCT
GAGGTGGCGC CTCAACGTCA ACTTGCGAGT GTGGTGCCGC TATTTAAGCA GTTTGGTCAA
TATGCCATCG CCGCCAGCGT CGCCTTGGTC GCCGTGATCG GCGTGCAGAA TTATAATCAG
GGTGGCGTCG AAGATGCTCC TATGCCAGTG CTCAATACCC GTCCGCTGAT TGGCAGCGCG
TCGCCTGTGA GCCTACAGAC TGGCCCGGTA CAACAGAATC AAAGTTATAC CAATGAGCGT
GTGATGGAGC AGCGTCATCG CATCAACACC TATATTCAAG ATCATATGCT GCAGCAAAGA
TTGAATAACA GTGCCAATAT AGACGACAAT GGTGAGCTCA CGCCTATCCC GGTGAATCAC
TAA
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| Protein sequence | MDKLGQEWVS AAVDGEIDEQ ELAQLAADTD SHEKWRDYHM IGDAMRGELP AAINLDLSAN
IAAAIELEPS ILVPKRVETP EVAPQRQLAS VVPLFKQFGQ YAIAASVALV AVIGVQNYNQ
GGVEDAPMPV LNTRPLIGSA SPVSLQTGPV QQNQSYTNER VMEQRHRINT YIQDHMLQQR
LNNSANIDDN GELTPIPVNH
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