Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1035 |
Symbol | |
ID | 4920630 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1197527 |
End bp | 1198444 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640162568 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001093165 |
Protein GI | 127511968 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000217191 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACATC TGCCGAGCCT GAAAAACCTT TACTATCTGG TCAATCTCTA TCAGGAACAG AACTTTAATC GCGCGGCCAA GCTGTGCCAC GTGAGCCAGT CGACCCTGTC GAGTGGGATT CAAAACCTGG AGGAGCAGCT GGGTCATCAA CTGATCGAGC GCGATCATAA GTCCTTTATC TTCACCGCCA TCGGCGAAGA GGTGGTGCAA CGCTCCCGCA AGCTGCTGAC GGACGTCGAC GATCTGGTGG AACTGGTGAA GCACCAGGGC CAGCCGATGA CAGGGGATAT CCGCCTGGGC TGCATTCCTA CCATCGCGCC GTTTCTGCTG AGCCGGGTGG TGAAACATTG CCAGCAGGAA TATCCCGAGC TGACGCTGTT TTTGAAGGAA GACACCACGG AGCGACTATT GGATGCCCTG GGTAAGGGCG AATTGGATCT GCTGCTGCTG GCTCTGCCGG CCGACACCAG TGGCTATCAC AGCATGAAGG TGGGGATAGA TCCCTTCAAG CTGGTGATGC ACAAGGAGCT CAGCAGTGAG GTGCACCAGC CCATAGATTA CAAGGCGCTG CCTGATGAGA GCATCTTCCT ATTGCAGTCA GAGCACTGTA TTACCGGCCA TGCCATCAGC GCCTGCAGTC TGGCCGATAG CGACAAGATC AACCCCTTCG CTGCGACGAG TTTGCACACA CTGGTGCAGA TGGTAAACAG CAAGCTGGGG ACCACCTTCC TGCCACAGAT GGCGATAGAT GCGGGGATAT TGAATGATAC GGATCTCACC GCCCTGACGC CGCCGGGCGA GGCGCCTTAC CGGGATATAG GCCTGGTCTG GCGTCAGACC TCCAGCCGTA TCATGACCTT CAGAACCTTA GGTAAGGCGA TTCAAAGCTT GTTGGAACAG GCGGAGGCGG AGAGTTAG
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Protein sequence | MKHLPSLKNL YYLVNLYQEQ NFNRAAKLCH VSQSTLSSGI QNLEEQLGHQ LIERDHKSFI FTAIGEEVVQ RSRKLLTDVD DLVELVKHQG QPMTGDIRLG CIPTIAPFLL SRVVKHCQQE YPELTLFLKE DTTERLLDAL GKGELDLLLL ALPADTSGYH SMKVGIDPFK LVMHKELSSE VHQPIDYKAL PDESIFLLQS EHCITGHAIS ACSLADSDKI NPFAATSLHT LVQMVNSKLG TTFLPQMAID AGILNDTDLT ALTPPGEAPY RDIGLVWRQT SSRIMTFRTL GKAIQSLLEQ AEAES
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