Gene Shew_1017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1017 
Symbol 
ID4923104 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1177122 
End bp1177472 
Gene Length351 bp 
Protein Length116 aa 
Translation table11 
GC content50% 
IMG OID640162550 
Productiron-sulfur cluster insertion protein ErpA 
Protein accessionYP_001093147 
Protein GI127511950 
COG category[S] Function unknown 
COG ID[COG0316] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00049] Iron-sulfur cluster assembly accessory protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000125039 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGAAC AAGCTGAAGA TACAATGCCA ATTCGTTTTA CCGACGCGGC AGCGGCCAAG 
GTAAAAACCC TATTGGAGGA AGAGCAAAAC GACGCGCTTA AGTTACGTGT GTACGTGACA
GGTGGCGGGT GTTCAGGTTT TCAGTATGGC TTTACATTCG ATGAGAAGGT CAACGAAGGT
GACTTTACCG TTGAGAAACA AGGGGTTCAA TTGGTTGTCG ACCCAATGAG CCTGCAATAC
CTGGTAGGCG GTGAAGTGGA TTACACCTCG GGCCTGGAAG GCTCTCGTTT CTTCGTTAAG
AACCCTAACG CCACCACCAC CTGTGGCTGT GGTGCCAGCT TCTCGGTTTA G
 
Protein sequence
MTEQAEDTMP IRFTDAAAAK VKTLLEEEQN DALKLRVYVT GGGCSGFQYG FTFDEKVNEG 
DFTVEKQGVQ LVVDPMSLQY LVGGEVDYTS GLEGSRFFVK NPNATTTCGC GASFSV