| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1009 |
|---|
| Symbol | |
|---|
| ID | 4920858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1166146 |
|---|
| End bp | 1167909 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640162542 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_001093139 |
|---|
| Protein GI | 127511942 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00166085 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACAAGG CGTTTTACGG ACTTAGCGAT AACCCGTTTT CGATCGCACC CAACCCTCAT
TATCTGTTCC TGAGTGACAG GCATCGTGAG GCGTTGGCTC ATTTAACCTA TGGATTGGGT
GAAACCGGTG GTTTTGTCTT GTTAACCGGC GAGGTGGGCA CGGGAAAGAC CACAGTGTCG
CGCTGCCTGC TCAACCAACT GCCCGAAAAT ACCGATACCG CCTTTATCCT CAACCCCTCG
CTGACCGAGC TTGAGCTGCT GGCCACCCTG TGTGACGAGC TGGGGGTGCA TTATGGCGAG
TCGCCCACCC TGAAGCAGCT CACCGATAAG CTGAGTCAGT TCCTGCTGGC CAACCATGAG
AAGGGGCGCA ATACCGTCCT GATCATCGAC GAGGCGCAGC ATCTACGGGC CGAGGTGCTG
GAGCAGCTTA GGCTGCTGAC CAACCTGGAA ACAGATACCA AGAAGCTACT GCAGGTGATC
CTTATCGGTC AGCCGGAGCT ACAACAGCTG CTTAAGCGTC AGGAACTCAG ACAGTTGGCT
CAGCGCATCA CCGCACGTTA TCACCTGCTG CCATTGACTC AGCAGGAGAT CGCCCTCTAT
GTGCAGCACA GGCTTCAGGT AGCTGGACGT CACGAGCCGC TGTTTCACCG CAGCGCCATC
AAGACGCTCC ACCAATACAG TGGCGGTATT CCCCGCCTGA TTAATCTCTT GTGTGAACGT
GCCCTAATGG CAGGTTATGC CCAGTCTAAG GTGCCTATCG ACGCCAACAT GGTGAGAACC
GCCGCCAGCG AAGTCTTGGG CGAGGAGATC AAGCAGCGCA AACTGCTGTG GCCGGCGACG
GCCGCGACCC TGATCCTGGC GACCTTTGCC GGCGCCTTCT ACTTCTTTAA TCTGCAGGGG
CATGGCGGCA TAGCTCAGGC AAACACAGAT CAGGCAAACA CAGCTCAGGC AAATATGGCC
CAGACTGGCG CAGTGCAGGC CAATGAGCCG AGTGCCACCG GTGCGCAGCA GGCTAATCAG
AACCATTCAC AAGCCGTCCA GACACAAACG CAGCCACAAA CTCAAACCAA TCTGGCAAGC
CGCCAAGTTG AAGAGAGCAA TGCCAGCCTG AGCGCCGATC AGCGCATATT GCGTCAGGCA
ATCAATCAGA GTCGCAGCAT AGACACCGCC TACGCCGCCA TACTCGGCCT GTGGGATAAG
GCACCTTATG TTGGCCTGAC CGCCTGTCAG TCGGCCAAGC AGCAGGGGCT GGATTGCTTC
CAGCAGCAAG GCAACTGGCA TTCCTTGGTA CGCCTCAACT ATCCCGCCGT GGTCTATTTG
CAGGATGAGC GCGGCGAGCC CTTCTACGGA ACCGTCGTGT CCCGCCAGGG CGAGCAGCTG
TTGCTGCAGC TGGCGGAGCA GCAGCTGTGG GTCGACAGAG ACTGGTTTAC CCGCCACTTT
GCCGGTACCT TCGAGCTATT GTGGCAGGCA CCAAGCTATC AGCCTAAGGA GATAGGCCGA
GGCTCGGCGC CGGCGCAGAT CCAGTGGCTG GAGAATGCCC TGGCGCAGAT CCAGAACAAG
CCCGCCCGTT TGGTCGACTA TTTCGATGCC GAGCTGGAGC AATCTCTGAT GGATTTCCAG
CGTCAGCATG GCCTGCGCGC CGATGCCATC GCCGGTAGCC AGACCTTAGT GCAGCTCAAT
CTCTACCTCA GCGATAAGGG CCCGAGATTG CAGGAGCAGC AAGTAGGATT GCAGGGAAGA
GTGCAAGGCG AGGGACGCTA CTGA
|
|---|
| Protein sequence | MYKAFYGLSD NPFSIAPNPH YLFLSDRHRE ALAHLTYGLG ETGGFVLLTG EVGTGKTTVS
RCLLNQLPEN TDTAFILNPS LTELELLATL CDELGVHYGE SPTLKQLTDK LSQFLLANHE
KGRNTVLIID EAQHLRAEVL EQLRLLTNLE TDTKKLLQVI LIGQPELQQL LKRQELRQLA
QRITARYHLL PLTQQEIALY VQHRLQVAGR HEPLFHRSAI KTLHQYSGGI PRLINLLCER
ALMAGYAQSK VPIDANMVRT AASEVLGEEI KQRKLLWPAT AATLILATFA GAFYFFNLQG
HGGIAQANTD QANTAQANMA QTGAVQANEP SATGAQQANQ NHSQAVQTQT QPQTQTNLAS
RQVEESNASL SADQRILRQA INQSRSIDTA YAAILGLWDK APYVGLTACQ SAKQQGLDCF
QQQGNWHSLV RLNYPAVVYL QDERGEPFYG TVVSRQGEQL LLQLAEQQLW VDRDWFTRHF
AGTFELLWQA PSYQPKEIGR GSAPAQIQWL ENALAQIQNK PARLVDYFDA ELEQSLMDFQ
RQHGLRADAI AGSQTLVQLN LYLSDKGPRL QEQQVGLQGR VQGEGRY
|
|---|
| |