| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0997 |
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| Symbol | |
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| ID | 4920631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1155444 |
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| End bp | 1157249 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640162530 |
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| Product | DNA primase |
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| Protein accession | YP_001093127 |
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| Protein GI | 127511930 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0358] DNA primase (bacterial type) |
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| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.941593 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGTG CCTACGCACG GCTTGTTTGT TTCTACTCTT TCGGTTTAAT TTCGCGAAAA
GGCGGCATTT ATACAGCAAT GGCGATACCT CGTGAGTTTA TCAATGAGCT TGTAGCTCGC
ACCGATATAG TCGATCTCAT CGACGCCAAG GTCCCCCTGA AAAAGGCGGG CAAAAATCAT
TCTGCCTGTT GCCCCTTCCA TAGCGAAAAG TCACCCTCTT TTACCGTCAG CAGAGACAAA
CAGTTTTATC ACTGCTTCGG CTGTGGCGCC CATGGCAATG CCATCGATTT CGTCATGGAA
TATGACAGGC TCGACTTTGT CGATGCCATC GAGGAACTCG CCGGCCGTTT AGGCCTTGAA
GTCCCCAGAG AGCAAGGTAC AGGCAAACGC CGCGACGAAG GCTTAAGCCG CGACCTCTAC
CAGCTGATGG AAGAGGCCAG CCGCTACTTT CAAAGCCAAC TGAAACAGCA CACAGACAAG
CAGAAGGTGC TCGACTACCT CGCCCACCGA GGCCTCTCCG ATGAGGTGAT CGAGCACTTC
AACATCGGCT TCGCTCCCGA TGGTTGGGAT GGCCTTTTAG GGCGTTACCG GCAAAACCAG
GATGCCCAGG ACAAGCTACT CACCGCAGGT ATGGTGATTG AGAACGACAG CGGCAAGCGT
TACGACAGGT TCCGTGACCG CCTCATGTTC CCCATTCGCG ATCGCCGCGG CCGAGTAATT
GGCTTTGGCG GCCGAGTCTT AGGTGACGGC ACGCCGAAAT ACTTGAATTC GCCGGAAACG
CCCATATTTC ATAAGGGCTA TGAACTCTAT GGCCTGTATG AACTCAAACA GAGACACAGG
GATCCCAGTC AGATCCTGAT TGTCGAAGGC TATATGGACG TGGTGGCCCT GACACAATTT
GGCGTCGACT ATGCGGTTGC CTCTCTGGGC ACCTCGACCA CGGCGGATCA ATTTCAGTTG
TTGCTGCGCA GCGCCAAAGA GGTGATCTGT TGTTACGACG GCGACAAGGC AGGTACCGAG
GCGGCCTGGC GGGCACTTGA AACCGCCCTG CCGCTGCTCA AGCCCGGCGA CCAAGTAAAA
TTTATGTTCT TGCCCCAGGG GGAAGATCCC GACTCGCTGG TGCGTCAGAT AGGCAAACCG
GCCTTCGAGC AGCTGATTGC CGAGGCCAAG TTACTACCGG AATTTCTGTT CGATACCTTA
GCCAGCCGCT ATGGCACGGA CAAGGGCACC CTGGCCAAAC AGGCCATGAG CCTGATAGAG
AAAGTACAAG ACACAGTTCT GCAGAGCCTT TTGCTTGAGA ATCTCGCCTA TAAGCTCGGC
ATGAACAGTG CAGAAGAATT GCAGCGTAAG CTCGGCTTTA AACGCATTGA TGCAAATAAG
CCCCTGCAAA ACAAAGCGCT TAAGGGACGC GGTACCCCAC TGCGACTAGC CATCGCCCTG
CTGGTACAGC ATCCGCACCT AGGCAATAAC CTGCCTGTGC AGCCTGCGCT AAAACATATC
AAGATGGCTG GCATAGATTT GCTCAGCCTC TTACTCGACA GAACTCGCGC CGAGAAGGTC
AACAGCGCAC AACTACTTGA ACAGTTCAGG GGTGACGATC AGCTAGACAC CCTGAAGAAA
TTAGCCCAAT GGGAGCATCA AGTGGCGGAT GAAAACCTTC AGCAAGAGTT CAAAAAAGCC
CTGATTTGGT TGAACAATCA ATATATTGAA CAACGTTATC AGGAATTGAG CTTAAAACAG
CACCATACTA AAGAAGAGCG GATGCAACTT AAAAAGCTCA TCGCAGTAAT CCAAGGGCAA
GCTTAG
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| Protein sequence | MSRAYARLVC FYSFGLISRK GGIYTAMAIP REFINELVAR TDIVDLIDAK VPLKKAGKNH
SACCPFHSEK SPSFTVSRDK QFYHCFGCGA HGNAIDFVME YDRLDFVDAI EELAGRLGLE
VPREQGTGKR RDEGLSRDLY QLMEEASRYF QSQLKQHTDK QKVLDYLAHR GLSDEVIEHF
NIGFAPDGWD GLLGRYRQNQ DAQDKLLTAG MVIENDSGKR YDRFRDRLMF PIRDRRGRVI
GFGGRVLGDG TPKYLNSPET PIFHKGYELY GLYELKQRHR DPSQILIVEG YMDVVALTQF
GVDYAVASLG TSTTADQFQL LLRSAKEVIC CYDGDKAGTE AAWRALETAL PLLKPGDQVK
FMFLPQGEDP DSLVRQIGKP AFEQLIAEAK LLPEFLFDTL ASRYGTDKGT LAKQAMSLIE
KVQDTVLQSL LLENLAYKLG MNSAEELQRK LGFKRIDANK PLQNKALKGR GTPLRLAIAL
LVQHPHLGNN LPVQPALKHI KMAGIDLLSL LLDRTRAEKV NSAQLLEQFR GDDQLDTLKK
LAQWEHQVAD ENLQQEFKKA LIWLNNQYIE QRYQELSLKQ HHTKEERMQL KKLIAVIQGQ
A
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