Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0975 |
Symbol | |
ID | 4921926 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1120053 |
End bp | 1120958 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640162507 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001093105 |
Protein GI | 127511908 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAGT CATTGAAGTT TCGTTTGCCC AAGGGGCAGT GCTGGACGAT AGGCGTGCCC TATTTCTGGC TGCTGATGTT CTTTGCCTTG CCGTTTGCCA TCGTATTGAA GATCAGTCTG TCGACCCCGG CCGTGGCGAT TCCGCCCTAT GAGGCCTTGT ATCAATATGC CGATGAGTCG CTGCAGATCA TGCTCAATCT GGGCAACTAT ATTTTGATCT TCGAAGATCA TCTCTATATC AATGCCTACC TGGGCTCGCT CAAGATGGCC TGTGTTACCA CCATCGGCTG TCTGCTTATC GGTTACCCCA TGGCCTATGC CATTGCCAGG GCGCCTAAGC AGCATCAGAC AGTGCTGATC CTCTTGGTGA TGTTGCCATC CTGGACTTCG TTCCTTATCC GGGTGTATGC CTGGATGGGC ATCTTGAGTA ACAACGGGGT GATCAATAAC CTGCTGATGT GGCTGGGGGT GATCTCCGAG CCGATTCAGA TGCTTAACAC TAATTTCGCC GTCTATATCG GTATCATCTA CACCTATCTG CCCTTTATGA TCTTGCCGCT GTACGCCAAC TTGTCGCAGC TCGATGGCAG CCTGCTCGAG GCCGCGGCGG ATCTGGGTTC ACGTAGCCTC AACACCTTCT GGAAGGTGAC GCTGCCGCTG TCGAAAGGCG GTGTGATTGC CGGGTCTATG CTGGTGTTTA TTCCTGTGGT CGGGGAGTTT GTGATCCCTG AGCTATTGGG CGGTCCTGAT TCGCTCATGA TAGGTAAGGT GCTGTGGCAG GAGTTCTTCA ACAACCGTGA TTGGCCGGTC GCTTCGTCGC TCGCCATCGT GATGTTGGCA CTTCTGATCA TCCCTATCAC CCTATTCCAT CGTTATCAGT CCAGAAGTAT GGAGAAGACG ATATGA
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Protein sequence | MKKSLKFRLP KGQCWTIGVP YFWLLMFFAL PFAIVLKISL STPAVAIPPY EALYQYADES LQIMLNLGNY ILIFEDHLYI NAYLGSLKMA CVTTIGCLLI GYPMAYAIAR APKQHQTVLI LLVMLPSWTS FLIRVYAWMG ILSNNGVINN LLMWLGVISE PIQMLNTNFA VYIGIIYTYL PFMILPLYAN LSQLDGSLLE AAADLGSRSL NTFWKVTLPL SKGGVIAGSM LVFIPVVGEF VIPELLGGPD SLMIGKVLWQ EFFNNRDWPV ASSLAIVMLA LLIIPITLFH RYQSRSMEKT I
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