Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0882 |
Symbol | |
ID | 4922678 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1001547 |
End bp | 1003868 |
Gene Length | 2322 bp |
Protein Length | 773 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640162415 |
Product | organic solvent tolerance protein |
Protein accession | YP_001093013 |
Protein GI | 127511816 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1452] Organic solvent tolerance protein OstA |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000270887 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.785369 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCATATCC GTTACTTATT GGCATTGGCG CTACTCCCGC AGCTAGTCTT GGCAGACGAA TCGGAAACCA CTCCCGCGCC CGGTGCCCAG TGTCTGGTGC TCCCGCCTGT TCCCATTCCT GAGCCCAGCG CAGACGAACG TCCCCTAGAT CTGCAGCAGA TTAAGATCGT TTCCGACTCA TCGGCAGCTA AGATGGGTGA CAAGGCCAGT TTCCAGGGAG ATGTGACATT CAGCCAGGGC GGACGCCATA TCGCCGCCGA CAGCGCGGTA CTGGATCAGG CTAACGAGCG CCTAGATGCC AACGGCAACC TGGTGTTCCA GGACAATATG TTTACCGTCA CGGCCGACTC TCTCAGCGCC GAGATGCGCA GCAACAGCGC CCAACTTAAG GGTGCCCAAT ATTGGCTCCA CGGTCAGCAG ATCCACGGCG AAGCGGAAAA CCTGGAGATC ACCCAGGACA ACAACCTGCA CCTGTCGAAC ACCAACTTCA CGACCTGTCC GCCGGGCGAT AGCTCATGGC TGCTGGAAGC CGAGACCATC AAGATAGACA GCAGCGAAGA GTGGGGCGAG CTTTGGGATG CCAAGCTCAA GATAGGCGAT GTGCCCGTCT TCTATCTGCC CTACATGACA ATTCCCGTGT CGGAGAAGCG TAAGTCAGGC TTCCTGTTCC CCTATTTCAG CACCAGCACC ACCAATGGTG TCGAGGTAGC GACCCCCTAC TACTGGAACA TAGCGCCAGA GTATGATCTC ACCTTTACTC CGCACTATAT GTCGGCCCGC GGACTGTTCC TCAAGTCGGA ATTTCGCTAT CTCGCCGGTG AGGCCCAGCA GGGGCAGCTG AATGTGGAAT ACCTGAGCAA TGACGATCTG GTGCCCAACC GCGCCGACCG TTACCTCTAC CACTGGGAGC ATCAGGGGGC CATCGCCGAC AACTGGCGGG TACTGGCCAA CTTTACCGAT GTGTCGGACA ACAACTACTT CAACGATCTG CCCTCAGACG TGCTGCGCGC CACCGACAAC CAGCTCTCTC GCATAGGCGA AATCGCCTAT TTCGAAGATA ACTGGGACAT GTCTGCCAGA GTGCAGGATA TCAAGGTATT GGGTGAAGAA GAGTCTCCCT ATCAGGTGAT GCCGCAGATA GGCTTTAACT ATCGCGCCCC AGGTTTCTGG CAAGGCTTGG ACTTCAATCT CATGGGAGAA GCCAGCAACT TCCGCCATAA GGAAGATCAA TATGCTACCG CCAGCCGTCT GCACTTCGAG CCCAGTGTCT CACTACCGAT CCACGGGCCG GCCGGATCGC TGACCAGTGA GCTTAAGCTT CTGCAGACCA ACTACTGGCA GGACACCAAG AACTACACTG GCACTCAGCC GCTGGACAGC TCGGTGAGCC GTACCCTGCC CCAGGTGCGT ATCCACGGTC AGATAAACTT CGAGCGTTTC ACCGACTACT TCGATGCCAA CTATCGTCAG ACTCTGGAGC CACAGTTCCA GTATCTGTAT GTCGGCTATG AGGATCAGTC CAACATCGGC ATCTATGACA CAGCGCTGCT GCAGGAAGAC TACTACGGCC TCTTCAGGGA TCGCCGCTTC TCGGGTCTGG ACCGTATCGC CGACGCCAAC CAGATGACAC TGGGTTTAAC GACCCGTCTG TTTGACGACC ATAACCTCGA GCGCTTCAAG TTCAGCCTGG GTCAGATCTA CTACTTCGAG GACAGCAAGG TTGGCATTAC AGATCCTTCC CGTCCCAACG AGATCTTTAA GCAGGAAAAT ACCTCAAACT CAGTGCTGGC AGCAGAGCTC AACACTCAGC TCTACAGCGA TTGGTTCTTA AGCGGTGCCA TTCAATATGA CACCAAAAAC AGGAACAACA AGAAGAGTGA GGTCACCCTG GATTTCCGCC CCGGGGTCAA CAAGCTGTTG CAGCTCAGCT ACCGTTATGT GCCCGATTTA GTTAACAGCA ACACCAACGA ATCTGTTAAT GTGTCGCAAA CCGGCTTGCG TACGGCTTGG CCGATCAACG ACAACTGGTA TATCGTGGGC AACTGGTATT ACGATCTCAA TGAGAAACGT AGCGTCGAGA CCTACACAGG ATTTCAATAC GAATCTTGTT GCTGGGCGGT GCGCTTAAGT TATCATTACC GCATTAAAAC CAACTATGTT GACAACCTGG ATCCCACGTT CAACGACAGG GAGCTGTTCG AAAGCGGCTT CTACCTGAAC TTTGTGATCA AGGGATTAGG GGGTTCCGGC CCGCTTGGGG TATCGGACAT GCTTAACGAT GGCCTGTTTA ACTATCGCAA GCCGCTCTAC CTGAAAAACT AG
|
Protein sequence | MHIRYLLALA LLPQLVLADE SETTPAPGAQ CLVLPPVPIP EPSADERPLD LQQIKIVSDS SAAKMGDKAS FQGDVTFSQG GRHIAADSAV LDQANERLDA NGNLVFQDNM FTVTADSLSA EMRSNSAQLK GAQYWLHGQQ IHGEAENLEI TQDNNLHLSN TNFTTCPPGD SSWLLEAETI KIDSSEEWGE LWDAKLKIGD VPVFYLPYMT IPVSEKRKSG FLFPYFSTST TNGVEVATPY YWNIAPEYDL TFTPHYMSAR GLFLKSEFRY LAGEAQQGQL NVEYLSNDDL VPNRADRYLY HWEHQGAIAD NWRVLANFTD VSDNNYFNDL PSDVLRATDN QLSRIGEIAY FEDNWDMSAR VQDIKVLGEE ESPYQVMPQI GFNYRAPGFW QGLDFNLMGE ASNFRHKEDQ YATASRLHFE PSVSLPIHGP AGSLTSELKL LQTNYWQDTK NYTGTQPLDS SVSRTLPQVR IHGQINFERF TDYFDANYRQ TLEPQFQYLY VGYEDQSNIG IYDTALLQED YYGLFRDRRF SGLDRIADAN QMTLGLTTRL FDDHNLERFK FSLGQIYYFE DSKVGITDPS RPNEIFKQEN TSNSVLAAEL NTQLYSDWFL SGAIQYDTKN RNNKKSEVTL DFRPGVNKLL QLSYRYVPDL VNSNTNESVN VSQTGLRTAW PINDNWYIVG NWYYDLNEKR SVETYTGFQY ESCCWAVRLS YHYRIKTNYV DNLDPTFNDR ELFESGFYLN FVIKGLGGSG PLGVSDMLND GLFNYRKPLY LKN
|
| |