| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0842 |
|---|
| Symbol | |
|---|
| ID | 4922465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 964472 |
|---|
| End bp | 965101 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640162375 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001092973 |
|---|
| Protein GI | 127511776 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000336278 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAAC CATATTCAGT TTTGGTCGTA GACGATCATC CCCTGCTACG TCGCGGGATC
TGTCAACTTA TCACCTCTGA CTCAGACTTC ACCCTGTTTG GTGAAGCAGG CAGCGGCCTA
GATGCCCTGT CGGCAATTGC CGAAAACGAA CCAGATATCG TGCTACTGGA CCTCAACATG
AAGGGAATGA CAGGGCTTGA TACCCTCAAT GCCTTACGTC AGGAAGGGGT CACCAGCCGC
ATCGTGATCC TCACGGTATC CGATGCCAAG CAGGACGTTA TCCGCCTGGT CAGGGCCGGC
GCCGACGGTT ACCTACTGAA AGACACAGAG CCAGATCTGC TGCTGGAGAA GCTGAAGAAT
GCCATGCAGG GTCACAGAGT GATCTCTGAG TCGGTGGAAG ACTTCATCTA TGAGCTGAAA
GATGGCGCCG ACGAGCAGGC CTGGATAGAC AACCTGACCC CGAGAGAGCT ACAGATCCTC
GAGCAACTGG CCGAAGGCAA GAGCAACCGG GTGATCTCAG AGCAGCTGCA TATCAGCGAA
GGCACGGTCA AGGTGCATGT GAAGAACCTG CTGCGCAAGG CCAACGCCAA GTCACGTACA
GAGATGGCGG TACGCTACCT TAACCAGTGA
|
|---|
| Protein sequence | MGKPYSVLVV DDHPLLRRGI CQLITSDSDF TLFGEAGSGL DALSAIAENE PDIVLLDLNM
KGMTGLDTLN ALRQEGVTSR IVILTVSDAK QDVIRLVRAG ADGYLLKDTE PDLLLEKLKN
AMQGHRVISE SVEDFIYELK DGADEQAWID NLTPRELQIL EQLAEGKSNR VISEQLHISE
GTVKVHVKNL LRKANAKSRT EMAVRYLNQ
|
|---|
| |