Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0836 |
Symbol | |
ID | 4921316 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 959579 |
End bp | 960172 |
Gene Length | 594 bp |
Protein Length | 197 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640162369 |
Product | membrane lipoprotein lipid attachment site |
Protein accession | YP_001092967 |
Protein GI | 127511770 |
COG category | [R] General function prediction only |
COG ID | [COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) |
TIGRFAM ID | [TIGR02722] uncharacterized proteobacterial lipoprotein |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0143317 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAT TCAACCTCAT TTTTATCATC GCCGTGGCGA TTGGCCTGGC GGGCTGTCAA TCTAAGGTGC AGTACGGTGA TGCAACTGAA GTCGAAACCG TTAATGAAAA CTTCGGTTCT ACGGATCTTC AGGCGATCAC TGCCAAGATG GTCGACAGCA TGCTGAGCTT CCCGCCAGTG GTCGCCATGA CAGCCAAAGA TCGTCCCGTC ATCTTCGTCG ACAAGATTAA GAACAAGACC TCAGAGCATA TCGACACCGA ATCGGTTACC GACTCCATCA GCAACAAGCT GCTGCGCTCA GGTAAGTTCC GCTTCATCGA CATGACTAAG GTCGACACGG TACGCAAGCA ACTGGATTAT CAAAACAATG CCGGCATGGT CGACCCATCG ACCGCCATCA ACTTCGGCCG TCAGATCGGT GCTCAGTATA TGCTGTACGG CAACCTGTCG AGCATAGTTA AGCAAGATGG CAGCACTAAG GATGTCTACT ACAAGATGAC CATGCGCCTG ATGGATCTGG AAACCGGCCT GATCGAATGG TCTGACGAGA AAGAGATCCG CAAGACCAAG TCGAAGTCTT TCCTCGGCAT GTAA
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Protein sequence | MKKFNLIFII AVAIGLAGCQ SKVQYGDATE VETVNENFGS TDLQAITAKM VDSMLSFPPV VAMTAKDRPV IFVDKIKNKT SEHIDTESVT DSISNKLLRS GKFRFIDMTK VDTVRKQLDY QNNAGMVDPS TAINFGRQIG AQYMLYGNLS SIVKQDGSTK DVYYKMTMRL MDLETGLIEW SDEKEIRKTK SKSFLGM
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