| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0818 |
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| Symbol | |
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| ID | 4921928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 941285 |
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| End bp | 943198 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162351 |
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| Product | peptidase U32 |
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| Protein accession | YP_001092949 |
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| Protein GI | 127511752 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0826] Collagenase and related proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAAGC CTGAGATTTT TATCCCCGAT AGCGCCGCCA GTGCGCCGGT AACTACCCGC
TCAAACCGCC TCGAGCTCTT GGCCCCCGCC AAGAATGCCG ACTATGGTAT CGAGGCCATC
AAGCATGGTG CCGACGCCGT TTATATCGGT GGCCCAGCTT TCGGTGCCAG GGCGACTGCC
GGCAACAGCG TCGAGGATAT CGCGCGTCTG TGTGAGTTTG CCCACCGCTA TCACGCCCAG
GTGTTTGTCG CCATCAACAC CATCTTGATG GACGATGAGC TGGACGCGGC GCAGAAGTTG
ATCTGGCAGG TGTATGAGGC CGGTGCCGAC GCGCTGATAG TGCAGGATAT GGGGGTGCTT
CAGCTGGATA TTCCACCAAT CGCCCTGCAT GCCAGTACCC AGATGGATAA CCGTAATCCA
GAGAAGGTTG CCTTCTTAGA GCAGGTAGGC TTCTCACAGG TGGTGCTCGC CCGTGAACTG
GGCCTGAGTC AGATCCGCGA CGTGGCAGCT AAGACCAATA TGCAGCTGGA GTTCTTCATT
CACGGCGCCT TGTGCGTTGC CTACAGCGGC CTGTGTAACC TGAGTCATGC CTTCAGTAAC
CGCAGCGCCA ACCGCGGTGA ATGCTCGCAG ATGTGCCGTC TGCCGGGGGA TCTCAAGACC
CGCCAGGGTG AGGTGTTGGC GCAGAACGAA CATCTGCTGT CGCTCAAAGA CAACAACCAG
ACAGATAACC TGGAGGCGCT GATCGACGCC GGTATCCGCT CCTTTAAGAT CGAGGGCCGC
CTCAAAGATC TCAGCTATGT GAAGAACGTG ACCGCTCATT ATCGCCAGGA GCTGGATAAG
ATCATCGCGC GTCGCCCCGA GTTTGTGGCA TCGAGCCACG GCCGCTGCGA GCACAGCTTC
ACGCCTAACA CTGAGAAGAC CTTCAACCGT GGCCGCACCG ACTACTTCGT CAACGAACGT
AGTCAGGGGG TCAGCGATTT CCGCTCACCG AAATATATCG GTGAAGAGGT GGGCAAGGTC
GCCGCCCTGG GTAAAGATTT TATTCAGGTA GAATCGAGCC ACAGCTTCAA CAACGGTGAC
GGCCTATGTT ACTTCCCGCC TAATTATGAG AAGGCCAAGC AGTCTGACGA TAAGCTGCAG
GGGCTCAGGG TCAACCGCGC CGACGGCAAC AAGCTGTATG TGATCGCCGT GCCGGGCGAT
CTTAAGGTAG GCGCCACCCT GTATCGTAAC CATGACCAGG CGTTCGAGAC AGTGCTGTCC
AAGGAGTCCT CCAAACGCAT CATCAAGGTG GACATGACGC TGAGTGATAC CGAAAAAGGG
ATCGCCCTGA CCATGACGGA CCAATATGGC CTGAGCGCCA CGCGCGAGCT GGAACTCGAC
AGGACCCCGG CCACAGACAC AGAGAAGGCG CTGAAGAATC TGCGTAAGCA GCTGGGTAAG
CTGGGCAGCA CGGACTTCGA GGCCCGCGAG ATCAATATCG AGACTGCCAG TCCCTGGTTT
ATGCCGGCCT CCCTGCTTAA TGGCCTGCGC CGTGACACGG TTGCCGCCCT GGAGCTGGCG
CGCGTCGAGG GCTACGAGCG TCCTCAGGCA TGGAAATACA ACCAAGACGC CGTCTATCCC
TTTAAGCATC TGAGCTTCAT GGGTAACGTG GCCAACGAGA AGGCGAAAGA CTTCTACACA
CGTCATGGGG TGATCGAGAT AGAAGACACC TATGAGAAGA ACGGCGTGAC CGAGGATGCG
CCGTTGATGG TGACCAAGCA CTGCCTGCGG TTTAACTTTA ACCTATGCCC GAAAGAGGTG
CCCGGCATCA AGGCGGAGCC GCTGCAGATT GAGATAGGTA AAGATGTGCT TAAGCTGGTC
TTCGACTGTC CTAAATGCGA AATGATGGTT GTCGGCGCTA ACCGTCAGGT ATAG
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| Protein sequence | MDKPEIFIPD SAASAPVTTR SNRLELLAPA KNADYGIEAI KHGADAVYIG GPAFGARATA
GNSVEDIARL CEFAHRYHAQ VFVAINTILM DDELDAAQKL IWQVYEAGAD ALIVQDMGVL
QLDIPPIALH ASTQMDNRNP EKVAFLEQVG FSQVVLAREL GLSQIRDVAA KTNMQLEFFI
HGALCVAYSG LCNLSHAFSN RSANRGECSQ MCRLPGDLKT RQGEVLAQNE HLLSLKDNNQ
TDNLEALIDA GIRSFKIEGR LKDLSYVKNV TAHYRQELDK IIARRPEFVA SSHGRCEHSF
TPNTEKTFNR GRTDYFVNER SQGVSDFRSP KYIGEEVGKV AALGKDFIQV ESSHSFNNGD
GLCYFPPNYE KAKQSDDKLQ GLRVNRADGN KLYVIAVPGD LKVGATLYRN HDQAFETVLS
KESSKRIIKV DMTLSDTEKG IALTMTDQYG LSATRELELD RTPATDTEKA LKNLRKQLGK
LGSTDFEARE INIETASPWF MPASLLNGLR RDTVAALELA RVEGYERPQA WKYNQDAVYP
FKHLSFMGNV ANEKAKDFYT RHGVIEIEDT YEKNGVTEDA PLMVTKHCLR FNFNLCPKEV
PGIKAEPLQI EIGKDVLKLV FDCPKCEMMV VGANRQV
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