Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0812 |
Symbol | lysS |
ID | 4920766 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 933950 |
End bp | 935452 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640162345 |
Product | lysyl-tRNA synthetase |
Protein accession | YP_001092943 |
Protein GI | 127511746 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGAAC AAACTCAAGA CGAAAACAAG TTAATTGCAG AGCGCCGTGC CAAGTTAGAT CACGTTCGCG CTTCTTGCCC TGCTAACGGT CACCCGAACA ACTTCGATCG AAAACATAAG GCTGCCGACA TCCAGGCCGA ATATGGTCAA TACAGCAAGG AAGAGCTGGA AGAGATGAAT GTCCAGCGCT CTATCGCCGG TCGTATCATG GCTAAGCGTG GCCCCTTCTT GGTTATCCAG GACGTGAGCG GTCGCATCCA GGCCTATGCC GGTAAAGACG TTCAGAAAGA TCTTAAGGCC AAGTATCAAG GTCTGGATAT CGGTGACATT ATCGGTGTGA CCGGCCAGCT GCACCTGTCT GGCAAGGGCG ACCTCTATGT CAACATGGAA GAGTACCAGC TGCTGACCAA GGCGCTGCGT CCGCTGCCTG AGAAGTTCCA CGGCCTGACT GACCAGGAGA CCCGCTACCG TCAGCGTTAT GTTGACCTCA TCGTGAACGA AGAGTCACGT GCGGCCTTCA TTATGCGCTC TAAAGTGGTT ACCGCTATCC GTAACTTCAT GGTAAGCAAA GAGTTTATGG AAGTGGAAAC CCCTATGATG CACAGCATCC CGGGTGGTGC CTCTGCGCGT CCTTTCATTA CTCACCACAA TGCGCTGGAT ATCGAGATGT ACCTGCGTAT CGCGCCTGAG CTATACCTCA AGCGTCTGGT GGTTGGTGGT TTCGAGCGCG TGTTCGAGAT CAACCGTAAC TTCCGTAACG AAGGCCTGTC GCCACGCCAT AACCCAGAAT TCACCATGAT GGAATTCTAT ATGGCCTATG CCGACTACAA AGATCTGATG GACCTGACCG AAGAGATGCT CTCTTCGATC GCCAAAGATC TGCTGGGTGA TACCAAGCTG CCATACGGCG AGCACACTAT CGACTTCGGC GGTCCATACG AGCGTCTGAG CATGCTGGAT GCGATCAAGA AGTACAACCC AGACAACGAG ACGATTCAGT CTATGACCTA TGAAGAGGTT AAAGACGTCG AGTTTATGCG TAACCTGGCC AAGAGCCTGG GCATGACTAT CGAGAAGTTC TGGACCTGTG GTCAGCTGCT GGAAGAGATC TTCGGTGAAA CCGCCGAGCC TAAGCTGATG CAGCCTACCT TCATCACTGG CTACCCGGCA GATATCTCAC CGCTGGCCCG CCGTAACGAT GAAAACCACT TCATCACCGA CCGTTTCGAG TTCTTCATCG GCGGTCGCGA AGTGGCCAAC GGCTTCAGCG AGCTGAACGA TGCGGAAGAT CAAGACAAGC GCTTCAAGGC GCAGGTCGAT GCTAAAGATG CGGGCGACGA TGAAGCCATG TTCTATGACG CCGACTACAT CACGGCGCTG GAGCACGGTC TGCCACCGAC TGCCGGTCAG GGTATCGGTA TCGACCGTCT GGTGATGTTG TTTACCAACA CCCACACCAT TCGTGACGTG ATCCTCTTCC CGGCGATGCG TCCTCAGGGA TAA
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Protein sequence | MTEQTQDENK LIAERRAKLD HVRASCPANG HPNNFDRKHK AADIQAEYGQ YSKEELEEMN VQRSIAGRIM AKRGPFLVIQ DVSGRIQAYA GKDVQKDLKA KYQGLDIGDI IGVTGQLHLS GKGDLYVNME EYQLLTKALR PLPEKFHGLT DQETRYRQRY VDLIVNEESR AAFIMRSKVV TAIRNFMVSK EFMEVETPMM HSIPGGASAR PFITHHNALD IEMYLRIAPE LYLKRLVVGG FERVFEINRN FRNEGLSPRH NPEFTMMEFY MAYADYKDLM DLTEEMLSSI AKDLLGDTKL PYGEHTIDFG GPYERLSMLD AIKKYNPDNE TIQSMTYEEV KDVEFMRNLA KSLGMTIEKF WTCGQLLEEI FGETAEPKLM QPTFITGYPA DISPLARRND ENHFITDRFE FFIGGREVAN GFSELNDAED QDKRFKAQVD AKDAGDDEAM FYDADYITAL EHGLPPTAGQ GIGIDRLVML FTNTHTIRDV ILFPAMRPQG
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