| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0769 |
|---|
| Symbol | |
|---|
| ID | 4920878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 877699 |
|---|
| End bp | 879030 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640162302 |
|---|
| Product | branched-chain amino acid transport system II carrier protein |
|---|
| Protein accession | YP_001092900 |
|---|
| Protein GI | 127511703 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1114] Branched-chain amino acid permeases |
|---|
| TIGRFAM ID | [TIGR00796] branched-chain amino acid uptake carrier |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.949455 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0746903 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAGAACA ATAAATTGAG TATGACGGAT ACATTGGGCT TAGGTTTCAT GACCTTTGCC
TTCTTCTTAG GCGCGGGGAA CCTGATCTTC CCGCCGCTGG CCGGATTCCT TGCCGGTGAG
AACATGTCTT GGGCCATGAT CGGCTTCCTG CTGACTGCGG TGACCCTGCC GCTGGTGACC
CTGATTGCCG TGGCAAAGGC CAACGGCAAG GTGATGGGCC TGCTGCCACC TTTGGCCGCG
ACCATGCTGG CGATCGCCAT CTACATCATC ATTGGCCCAG CCTTTGCCGC GCCTCGTGCC
GGTCTGGTGG CCTATGAGAT GGGCTACAAG CCTTTTATCC AAGATGCTCA GGCGAGTTTT
GAAGTCGCCG GTGTCGTCTT CACCAGCTCA CAGCTGCTCT ATACCAGCAT CTTCTTCGGC
ATCGCCATGT TGCTGTCGCT GTTCCCCGGC AAGCTGCTGG ACAGCGTAGG TAAGGTGCTT
ACGCCTATCA TGATCATCCT GCTGGTGGGT CTGGCAATCT CTGTGGTTGT GCTACCAGGC
TCAGACGTGG CCGCTGCTGT GGGCGACTAT CAGACGAACC CGCTAACCAA GGGGATCATC
GAAGGCTATA ACACCATGGA CACCTTGGCA TCGCTGATCT TCGGCATGCT GATCATCGAC
CTGCTGCGCA AGAAGGGCGT GGATTCGCCA AGAGAGCAGA CCAAGTACCT GGTGCGCGCA
GCCTTTATCG CTGCCGGTGG GCTGGCGTTC GTCTATGTAT CACTCTTCTA CCTGGGCGCG
ACCGCCGGTG ATCTGGCCGT GGGCGCCGAT AACGGCGGGG TGATCCTGAC CAACTATGTG
AACTATCAGT TTGGCGCCTC GGGTCAGCTG CTGCTGGCGG CCGTGGTGAC CCTGGCCTGT
CTGACGACGG TTGTCGGTCT GGTTTCTGCC TGCGCCGAAT ACTTCAACGA GCTGATGCCT
AGCCTCTCAT ACAAGCTATT GGTGGTGGTG ATGAGCGTCA CCTGCGCCGT GGTGGCTAAC
GTGGGTCTGG CGCAGCTGAT CAACATCAGC ATCCCTGTGT TGGTGACCAT CTACCCAGTG
GCGATCGCCC TGGTAGCGGT GACCTACCTG ACCGAGCGCT TCGCTCAGCC CGCCTTTGCC
CATCGCATGG TGTTGAGCGT GGCCCTGGTG TTCGGCATCA TCGATGGTCT TAAGGCGGCG
GGTGTCAACA TGAGCATGTT CGATGTGATG CCACTGTCGG CTCAGGGCAT GGCTTGGTTA
ATTCCGACGG CAATTACCAT CTTTGCCTGC TTGATGGTCA AACGCCCACG AGGTGAAGCG
GTATTAAATT GA
|
|---|
| Protein sequence | MQNNKLSMTD TLGLGFMTFA FFLGAGNLIF PPLAGFLAGE NMSWAMIGFL LTAVTLPLVT
LIAVAKANGK VMGLLPPLAA TMLAIAIYII IGPAFAAPRA GLVAYEMGYK PFIQDAQASF
EVAGVVFTSS QLLYTSIFFG IAMLLSLFPG KLLDSVGKVL TPIMIILLVG LAISVVVLPG
SDVAAAVGDY QTNPLTKGII EGYNTMDTLA SLIFGMLIID LLRKKGVDSP REQTKYLVRA
AFIAAGGLAF VYVSLFYLGA TAGDLAVGAD NGGVILTNYV NYQFGASGQL LLAAVVTLAC
LTTVVGLVSA CAEYFNELMP SLSYKLLVVV MSVTCAVVAN VGLAQLINIS IPVLVTIYPV
AIALVAVTYL TERFAQPAFA HRMVLSVALV FGIIDGLKAA GVNMSMFDVM PLSAQGMAWL
IPTAITIFAC LMVKRPRGEA VLN
|
|---|
| |