| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0752 |
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| Symbol | |
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| ID | 4920825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 852283 |
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| End bp | 854277 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640162285 |
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| Product | transketolase |
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| Protein accession | YP_001092883 |
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| Protein GI | 127511686 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.394111 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATCTC GTAAAGAACT CGCAAACGCT ATCCGTGTGT TAAGTATGGA TGCCGTTCAG
AAAGCCAACT CTGGTCACCC AGGTGCGCCA TTGGGAATGG CCGATATCGC CGAAGTGTTG
TGGAATGATT TCCTGAAGCA CAACCCGAAC AACCCAGAGT GGGTCGACCG CGACCGTTTC
ATCCTTTCAA ACGGCCACGG CTCTATGCTG ATTTACTCTC TGCTTCACCT GACGGGTTAT
GCATTGCCGA TGGATGAGCT GAAGAACTTC CGTCAGCTGC ACTCTAAGAC GCCGGGTCAT
CCTGAATATG GTTACACACC GGGTGTTGAA ACCACTACAG GTCCACTGGG CGCGGGTATC
AGCAACGCCG TAGGTATGGC GATTGCCGAG AAGACTCTGG CGGCGCAATT TAACCGTCCT
GGCCATGACA TTGTCGACCA CTACACCTAC TGCTTCCTGG GTGACGGCTG TCTGATGGAA
GGTATCTCTC ACGAGGCCTG TTCTCTGGCG GGTACCCTAG GTCTTGGCAA GCTGATTGCC
TTTTGGGATG ACAACGGCAT CTCTATCGAC GGTCACGTCG AAGGCTGGTT CACCGACGAT
ACCGCCAAGC GTTTCGAATC TTACGGCTGG CATGTGATTG CCGGTGTCGA TGGCCACGAC
AGCGATGCTA TCCGCAAGGC AATCGAAGAA GCCAAGTCAG TTACCGACAA GCCAACTATG
ATCTGCTGCA AGACCATTAT CGGTTTCGGT TCACCAAACA AGTCTGGCAG CCACGACTGT
CACGGCGCGC CACTGGGCGA TGCCGAAATT GCGGCTGCTC GTGAGTTCCT GGGTTGGGAA
CACGGTCCAT TTGAGATCCC TGCAGACGTT TACGCGGGTT GGGATGCCAA AGAAGTGGGC
GCGGCGAACG AATCTAGCTG GAACGAGAAG CTTGCTGCCT ATGAAGCCGC TTACCCAGAG
CTGGCGGCGG AATATAAGCG CCGCGTGATC ACTGGTGAAC TGCCAGCCGA TTTCGAAGAG
AAGGCACAGG CCTTCATCAA AGAGTGTCAA GAGAAGGGCG AAAACATCGC CAGCCGTAAG
GCATCACAAA ACGCTATCGC GGCCTTCGGC GCTGTCCTGC CTGAACTGCT CGGCGGCTCG
GCTGACCTGG CCGGTTCTAA CCTGACCCTA TGGTCTGGTT CTAAGGGCAT TCAGGAAGAT
CCAGCCGGTA ACTACATCTA CTACGGTGTG CGTGAGTTCG GTATGAGCGG CATCATGAAC
GGTGTGTCGC TGCACGGTGG TTTCATCAAC TATGGCGCGA CCTTCATGAT GTTTATGGAA
TATGCGCGTA ACGCGGTACG TATGTCTGCG CTGATGGGCA TTCAAAACAT CTTCGTTTAC
ACCCACGACT CTATCGGTCA GGGTGAAGAT GGCCCGACTC ACCAACCGGT TGAGCAGCTG
GCTAACCTGC GCATGACACC AAACATGATG GTATGGCGTC CATGTGATGC GGCGGAAACT
GCCGTAGCTT GGAAGATGGC TATCGAGCGT CGTAACGCGC CGACTTCACT GGTATTCAGC
CGTCAGGGTC TGCCTGCTCA GCCACGCAGC GAAGAGCAAC TGGCTAACAT CGCCAAGGGT
GCTTATGTGT TGCAAGATTG CGCCGGCACG CCAGATCTAA TCCTGATCGC AACCGGTAGT
GAGGTGCAGC TGGCACTGGA TTCGGCTAAG GCGCTGACCG AGCAAGGTAA GGCGGTACGC
GTGGTCTCTA TGCCATCTAC CGACGTGTTT GACGCGCAAG ACGCTGACTA CAAAGAGTCT
GTACTGCCTA AGTCAGTCAC TAAGCGTGTG GCCATCGAAG CGGCTCACGT CGATTACTGG
CACAAGTATG TCGGTTTCGA CGGCGCCATC GTTGGCATGA CCACCTTCGG TGAGTCTGCT
CCAGGCGGCG CGCTGATGAA GCACTTCGGC TTCACCGTTG AGAATGTGGT TGCCAAGGCA
AGCGCTATTC TCTAA
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| Protein sequence | MSSRKELANA IRVLSMDAVQ KANSGHPGAP LGMADIAEVL WNDFLKHNPN NPEWVDRDRF
ILSNGHGSML IYSLLHLTGY ALPMDELKNF RQLHSKTPGH PEYGYTPGVE TTTGPLGAGI
SNAVGMAIAE KTLAAQFNRP GHDIVDHYTY CFLGDGCLME GISHEACSLA GTLGLGKLIA
FWDDNGISID GHVEGWFTDD TAKRFESYGW HVIAGVDGHD SDAIRKAIEE AKSVTDKPTM
ICCKTIIGFG SPNKSGSHDC HGAPLGDAEI AAAREFLGWE HGPFEIPADV YAGWDAKEVG
AANESSWNEK LAAYEAAYPE LAAEYKRRVI TGELPADFEE KAQAFIKECQ EKGENIASRK
ASQNAIAAFG AVLPELLGGS ADLAGSNLTL WSGSKGIQED PAGNYIYYGV REFGMSGIMN
GVSLHGGFIN YGATFMMFME YARNAVRMSA LMGIQNIFVY THDSIGQGED GPTHQPVEQL
ANLRMTPNMM VWRPCDAAET AVAWKMAIER RNAPTSLVFS RQGLPAQPRS EEQLANIAKG
AYVLQDCAGT PDLILIATGS EVQLALDSAK ALTEQGKAVR VVSMPSTDVF DAQDADYKES
VLPKSVTKRV AIEAAHVDYW HKYVGFDGAI VGMTTFGESA PGGALMKHFG FTVENVVAKA
SAIL
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