| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0732 |
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| Symbol | |
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| ID | 4922977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 833279 |
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| End bp | 834619 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162265 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001092863 |
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| Protein GI | 127511666 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTGAGA TGTCGCTTCC GCTCCTCCTT ATCATATTCC TGGCTATTGG CCTGATAGCC
GTTGCGACAT GCATGCTTGC TCTGCGCTTT ATCCTCAGGC GCCGCGGCGT AGACTTTTCT
GCCTTGGAAA ATTCTATCGA GGATGGTCTG CTCCTTATTG ACGAACAGGC GAAGATCTTG
GCTCATAACA CCCAGGCCGC GGCCTTGATG AAGGCCGAGG GGAGTGACTT CACAGGCCAG
GCTCTCAGCC TCTGGCTCAA GGATTCCAGC GGTGAGCAGC TGCAGGTGTT TTCCGACCGT
CAGCTTGGCA CCAGCCTGAA CCTAGGCCAT GAGATCTTAA GCTTTACCCG CCTGGCCCGT
GAACCCAGAG GGCTGCTGCT CTTGGTGCGT CATCACAACT TGGAACAGGA CATTCGTCAG
GATATCGCCC GTTATCACCA CAGTCAGTAT TTCGCCAAGA TAGGCACCTG GGACTGGCAG
GTGGGCACTG ACACCCTCTA TTGGTCCGAT GCCATCTTCG GCATCTTCGG TTACAAGCTG
GGGGAGGTCA CCCCTAGTTA TGAGTTCTTC TACTCTAGGG TGCATCCCGA GGATCGAGAC
AAGGTGAAGG CGGGGGAGGC GCGCTGCATC GCCACTGGCG AGAACCATGA CGAGGAGTAT
CGCATCCTCT GGCCCGATGG CTCTGTGCAC TGGGTGCGCG AGACGGGCAA CCTGGTGAAG
GATAGCGATG GCCAGCTGTT AAAGATGGTG GGGGTGGTGC GTGATATTAC CCAGGAGAAG
GCGCTGCATC ATAAGCTCGA AAAGATGGCT CACCAGGACC CCTTAACCGG ACTGCCCAAC
CGGCTGCAAC TCGAGCTGCG TCTGAGTGAG GCGATTCGTG AGGCGTCGCA GAGCGGTGGT
CGCCTGGGGC TTATCTTCAT CGACCTTAAT CAGTTTAAGG CGATCAACGA TAGCCTAGGG
CATCAGGTGG GGGACCGTGT CTTGATGACG GCGGCCACCA GGCTGCAGAG CCTCAAGGGG
TCAGAGGATC TGGTGGCCCG CATCGGCGGC GATGAGTTTG TGATGCTATT GCCCCAGTGG
CCGGCTGATA GGCCGTTAGA GGAGGAGGTG GCGCGTCTGG CCGAGGCGCT GTTTGAGCGA
TTCGCCGAGC CTGTTATTCA GACCGGCAGG GGAATCGCAG CCAGCATAGG ATTCGCCATC
TATCCGGATC ATGCCGGCCA TATGGATGCG CTGCTGCATG TGGCCGATCA GGCCATGTAT
ATCGCCAAGG GGCGCGGGGA TAACCAATAT CATCTGGGGC CGGATCATCG CATGGATCTC
GGCCACCGTC TGGCCCGTTA A
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| Protein sequence | MAEMSLPLLL IIFLAIGLIA VATCMLALRF ILRRRGVDFS ALENSIEDGL LLIDEQAKIL
AHNTQAAALM KAEGSDFTGQ ALSLWLKDSS GEQLQVFSDR QLGTSLNLGH EILSFTRLAR
EPRGLLLLVR HHNLEQDIRQ DIARYHHSQY FAKIGTWDWQ VGTDTLYWSD AIFGIFGYKL
GEVTPSYEFF YSRVHPEDRD KVKAGEARCI ATGENHDEEY RILWPDGSVH WVRETGNLVK
DSDGQLLKMV GVVRDITQEK ALHHKLEKMA HQDPLTGLPN RLQLELRLSE AIREASQSGG
RLGLIFIDLN QFKAINDSLG HQVGDRVLMT AATRLQSLKG SEDLVARIGG DEFVMLLPQW
PADRPLEEEV ARLAEALFER FAEPVIQTGR GIAASIGFAI YPDHAGHMDA LLHVADQAMY
IAKGRGDNQY HLGPDHRMDL GHRLAR
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