Gene Shew_0698 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0698 
Symbol 
ID4923609 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp791670 
End bp793052 
Gene Length1383 bp 
Protein Length460 aa 
Translation table11 
GC content57% 
IMG OID640162231 
ProductNa+/H+ antiporter NhaC 
Protein accessionYP_001092829 
Protein GI127511632 
COG category[C] Energy production and conversion 
COG ID[COG1757] Na+/H+ antiporter 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGACG CGACAGCCTT AAGTCTTATC CCACCTGTGG TGGTCTTGGT GTTAGCGGTT 
TGGCTACGCC GTCCAATCCT TTCGTTAATC ATAGGTGCCT TAGTGGGTCT TGTCTTGTAT
CAACCCGATC AGGTGCTGAA TAACTTCTCC GATATCTCGC TCTCTGTCAT GGCCGATGAA
ACCATAGGTT GGTTGATTCT GGTCTGTGGC GGTTTTGGCG CCCTGATCGC CCTCCTGGTT
AAGACGGGGG GGTCTATGGC CTTCGGTCGC CATGCGCTCA AGTATGCCAA GGGGCCTAAG
TCATCTCTGC TGATGACCTT TATCCTGGGC GTGGTGATCT TTATCGACGA CTACCTCAAT
GCCTTGACTG TGGGGTCGAC CATGAAGTCG GTGACCGACA AGTTTAAGGT GTCGCGGGAG
ATGCTGGCCT ATGTGGTGGA CTCTACCGCC GCGCCCATCT GTGTGCTGGT GCCGCTATCG
ACCTGGGCCG TCTTCTTCGG CGGCCTGCTG GTGGACAACG GCGTGGCGGG CGAGGGCCAG
GGGATCAGCG TCTATATGTC GGCCATTCCT TACATGCTCT ACGCCTGGTT GGCGGTGGCC
ATGGTGCTGC TGGTGATCCT GGGCATAGTG CCTGCTTTTG GCCCGATGAA GAAGGCGCAG
CTGGCGGCCA TGGCGGGTAA ACCGGCCAAG GCGGTCGATG CCATCGACGA GGTGCAGACC
TCGGATGATT ACAGCGTCAA GGCGATCGAA GAGGAGTTTA AGCATGCCGA TAATCTGGGC
AAGCTGCATA ACTTCATGGT GCCAATAATC TTGCTGGTGG GCTTTACCGT CTACTTCGAC
ATCGACGTGC TCAAGGGGCT GATCGCCACG TTGGCGGTGA CCCTGCCTTA CTATGGCGTG
CAGCGTCTGA TGCCTCTGTC AGAGATGATG GAGCAGATGC TCGACGGCTT TAAGTCTATG
CTGCCGGCCA TAGGCACGGT TATCGCCGCC TTCGTGTTTA AGGATGTCTG TGACAAGCTG
ATGCTGCCGC AATATGTGAT TGGCAATCTG AGCCCCTTCA TGACCTCACA GTGGCTGCCG
GCCGTGGTCT TCCTGACCAT GTCGATTCTG GCCTTCGCCA CTGGCTCTAG CTGGGGGATC
TTCGCGGTAT CTATCCCTAT CGTGATGCCT CTGGCCCAGG CGGTGAATGC CGATATTCCT
CTGGTGATCG GCGCCTTGTT GTCGGCCTCA TCCTTCGGTA GTCAGGCCTG TTTCTATTCT
GACTCTACCG TGCTGGCGGC CCAGGGCTCA GACTGTAACC TGGTGAGCCA TGCGGTGACC
CAGCTGCCCT ACGCTCTGCT GGCGGCGGGA CTGACCTTTA TCGGTTTCCT TATCTTGGCC
TAA
 
Protein sequence
MSDATALSLI PPVVVLVLAV WLRRPILSLI IGALVGLVLY QPDQVLNNFS DISLSVMADE 
TIGWLILVCG GFGALIALLV KTGGSMAFGR HALKYAKGPK SSLLMTFILG VVIFIDDYLN
ALTVGSTMKS VTDKFKVSRE MLAYVVDSTA APICVLVPLS TWAVFFGGLL VDNGVAGEGQ
GISVYMSAIP YMLYAWLAVA MVLLVILGIV PAFGPMKKAQ LAAMAGKPAK AVDAIDEVQT
SDDYSVKAIE EEFKHADNLG KLHNFMVPII LLVGFTVYFD IDVLKGLIAT LAVTLPYYGV
QRLMPLSEMM EQMLDGFKSM LPAIGTVIAA FVFKDVCDKL MLPQYVIGNL SPFMTSQWLP
AVVFLTMSIL AFATGSSWGI FAVSIPIVMP LAQAVNADIP LVIGALLSAS SFGSQACFYS
DSTVLAAQGS DCNLVSHAVT QLPYALLAAG LTFIGFLILA