| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0610 |
|---|
| Symbol | |
|---|
| ID | 4920872 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 689834 |
|---|
| End bp | 691714 |
|---|
| Gene Length | 1881 bp |
|---|
| Protein Length | 626 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640162143 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001092741 |
|---|
| Protein GI | 127511544 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGGGC GATTGGGTTA TTGGTTGAAA TCTTGTCTGC GGGCGGGATG GCTAAATCTC
TGTATATCTG GCCTGTTTGC GTCAAGCCTG TTGCTGTTTA GCCAGCTAGC CCTTGCCGCG
ACGCCCGAAA CAAGTAGCGA CGACCTTATT CATTTCAGGG TCGGGGTGCT GGCCAATCAT
GGGGTGCAGA AGGGGATAGA GCGCTGGCAG CCCATGATGG ACCACCTGTC TCAGGAGGTG
CCGGGTACGC ATTTCGAGGT GGTGCCGGTA GATTTCGACG AGATGAGCCG CCAGCTGCTG
GCCCACGAGC TACAGTTCAT CGTCACCAAC CCGGGGCAAT ACTTTAACCT CAGCAGTAAC
TTCCCCCTCT CCTGGCTGGC GACCATGAAG AGCCATATGC ATGGCGGTGC CACCTTTGCC
ATCGGCTCCA CCATCATAGT GCGCGCCGAC AGCCAGATCT ACACCCTCAA GGATCTCGAA
GGCAAACATC TGGTGGCCAG CGATCCCCAG GCGTTGGGGG GCTACCAGGC CGCCATCGGC
CTGCTGCATA AGATGGGTTA CAACCCGGAG AACTACTTCG GGTCGCTGCG CTTCCTGGGC
TTTCCCCTGG AGCCCATTGT CTATCAGGTG CGCGACGGCA CGGTGGATGC GGCCATCACC
CCCTTCTGTA CCCTGGAGGA GATGATTCAG GACGGCCTGG TGAAGAAGGA GGATTTCAGG
GTGATCCACC CCACCATGCC GGCGGGCTAC GAGTGTCTGG TGAGCACCCA GCTTTACCCC
AACTGGTCCT TTGCCGCCGC CGATACCGTG CCGCCGGCCA TCACCCAGAA GATCACCCAG
GCCCTCTATG CCCTGGGGCC GGACCATCCC GCCGCCATTC AGGCCAAGAC CCTGGGCTGG
ACAGCGCCCA TCAGTCAGCT GAAGGTGATC AAGCTGTTTA AGGAGCTGCA GCTCAAGGCG
CCACCGCCAC CGCTGCACTA CACGGTATTG AAGTGGATGG AGAAGAACAA GGAGTGGGGC
CTGGCGCTGC TGTTGCTGTT TCTGGTGTCC ACCGTCTATC ACCTCTGGCT TGAGTATAAG
TTTCGGCAGA AGAGCGACTT TCTGATCGAC ACAGAGCGTC AGCTCAAGGA CAAGGCGCTG
CAGGTGGAGC GGATGAAGAG TGCGGCGATC CTCGGTGAGA TAGGCTCGGG GCTGGCTCAT
GAGCTGAACC AGCCGATCGC CGCCATCACC CAATACAGCG AGGGGGGCAT GATGCAGCTC
AACAGCCGCG GCGATGCCGA CTCAGACCTG TATGAGTTGC TGGCGAAGAT CAATGCCCAA
TCTGCCCGGG CCGGCGCCGT GGTGCACCGC ATCCGAGGCC TGCTCAAGCG GCGCAAGTCC
CAATATGAAG CCCTGTCTCT GGATGAAGTG GTCACCAACA CACTGGCGCT ATTTCGCCGC
GAGTTTCAGC AGCAGGGCAT CGTCCTCACC CAGGAGGTGC GCGGCGAGCC TTACAGCCTG
TTTGGCGACG CAGTCGGCCT GAGTCAGGTG CTGGTGAATC TTATCAAGAA CAGCCTGGAT
GCCATGGCGG AGATGAAACC CGACAGGGAG AAGCGACTGC TGCTGACCCT TGAATATGGT
GCCCAGCAGG CGACCCTCAA GCTGGTGGAC AATGGCCCCG GCCTCAAGGG CAAGGCCCAG
GATCTCATGG CCTCCTTCTA CTCCACTAAG GACGACGGCC TGGGGCTCGG CCTCGCCATC
TGCTGCGACG TGATGCGCCA GCATAAGGGG CTGTTCACCA TAGATAACTG CGCCAATCAT
GCCGACCTTC CCTGGCGGGA GGGATGCGTG GTGAGTTTGA GTTTGCCAAG AAACTTAGGG
ACTTGTGAGA GGGGAAGTTA G
|
|---|
| Protein sequence | MKGRLGYWLK SCLRAGWLNL CISGLFASSL LLFSQLALAA TPETSSDDLI HFRVGVLANH
GVQKGIERWQ PMMDHLSQEV PGTHFEVVPV DFDEMSRQLL AHELQFIVTN PGQYFNLSSN
FPLSWLATMK SHMHGGATFA IGSTIIVRAD SQIYTLKDLE GKHLVASDPQ ALGGYQAAIG
LLHKMGYNPE NYFGSLRFLG FPLEPIVYQV RDGTVDAAIT PFCTLEEMIQ DGLVKKEDFR
VIHPTMPAGY ECLVSTQLYP NWSFAAADTV PPAITQKITQ ALYALGPDHP AAIQAKTLGW
TAPISQLKVI KLFKELQLKA PPPPLHYTVL KWMEKNKEWG LALLLLFLVS TVYHLWLEYK
FRQKSDFLID TERQLKDKAL QVERMKSAAI LGEIGSGLAH ELNQPIAAIT QYSEGGMMQL
NSRGDADSDL YELLAKINAQ SARAGAVVHR IRGLLKRRKS QYEALSLDEV VTNTLALFRR
EFQQQGIVLT QEVRGEPYSL FGDAVGLSQV LVNLIKNSLD AMAEMKPDRE KRLLLTLEYG
AQQATLKLVD NGPGLKGKAQ DLMASFYSTK DDGLGLGLAI CCDVMRQHKG LFTIDNCANH
ADLPWREGCV VSLSLPRNLG TCERGS
|
|---|
| |