| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0593 |
|---|
| Symbol | |
|---|
| ID | 4922144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 669986 |
|---|
| End bp | 671896 |
|---|
| Gene Length | 1911 bp |
|---|
| Protein Length | 636 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640162126 |
|---|
| Product | ABC transporter-related protein |
|---|
| Protein accession | YP_001092724 |
|---|
| Protein GI | 127511527 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.40682 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCACCA TTACCCAAGC GCAACTTATT CGCGGCTCCA AGACCCTATT GGATGAAGCC
TCTCTGACTG TCTACCCCGG CCACAAGGTC GGCCTGGTGG GTGCCAACGG CACGGGCAAG
TCATCTCTGC TTGCGTTGAT CATGGGACAC CTCAGCCTGG ATAAGGGTGA GATTAGCGTG
CCCACGGGCT GGCAGATCGC CACAGTTGCC CAGGAGACCC CGGCGCTTGA GGTGAGCGCG
CTGGAATATG TGATCGACGG CGACCGCGAA TATCGCGAGC TGGAAGAAGC GCTGCACAAG
GCGCAGCTAG AAGATAACGG TCACCAGATC GCCCTGCTGC ATGGCAAGAT AGACGCCATC
GGCGGCTACA GCATCCGCGC CCGCGCCGCC AGCCTGTTGG CCGGCCTAGG CTTTAGTGAG
GCCGAGCAGC AAAATCCGGT GAAGAGCTTC TCGGGGGGAT GGCGCATGCG TCTCAACCTG
GCCCAGGCGC TGCTTTGCCG CTCCGAACTC CTGCTACTGG ACGAACCCAC CAACCACCTC
GACTTGGACA CCATGTACTG GCTAGAGAGC TGGATCAAGG CCTATCAGGG CACGCTGATC
CTCATCAGCC ACGACAGGGA CTTTATCGAC GCCATCGTCG ACGAGATAGT GCATGTCGAG
CACCATAAGC TCAACTACTA CAAGGGCAAC TACACCGCCT TCGAACGCAT CCGCGCCGAG
CGTATGGCCC AGCAACAGGT GGCCTATGAG CGCCAACAGA AAGAGCGCGC CCACATGCAA
TCTTTCGTCG ACCGCTTCCG CTACAAGGCC AGCAAGGCCA AGCAGGCCCA GAGCCGTCTC
AAGGCGCTGG AGCGGATGAC TGAGCTGCTG CCCTCCAAGG CCGACAGCCC CTTCTACATG
GCGTTTCGCG CCCCCGAGGC CCTGCCCAAC CCGCTGGTGA AGATGGAGCA GGTCTCCGTC
GGCTATGGCG ACAAGGCGAT CCTCAACCAT GTGCATTTGA ATCTGGTACC CGGTGCCCGC
ATCGGTCTAC TGGGGCGTAA CGGCGCGGGT AAGTCGACGC TTATTAAGCT GCTGGCCGAA
CAGCTCAAGC CCATGAGCGG CCTGTATGAG CCAAATCCCG GCCTCAATAT CGGTTACTTC
GCCCAGCATC AGCTGGAGTT TTTGCGCCTG GATGAATCGC CGCTGCAACA CCTGACGCGA
CTCGCCCCAA ACAACCGGGA GCAGGAGCTG AGGGACTTCC TCGGCGGCTA TGGCTTTAAC
GGCGACATGG CCCTGTCTCC GGTTCGCCCC TTCTCCGGCG GCGAAAAGGC CCGTCTGGTG
CTGGCGCTGC TGGTGTGGCA ACGCCCTAAC CTGTTGCTGC TCGATGAGCC CACCAACCAC
CTGGATCTCG AGATGCGTCA CGCCCTGACC ATGGCGCTGC AGGACTTCGA AGGTGCCATG
ATCATCGTAT CCCACGATAG ACACCTGCTG CGCCTGAGCT GTAGCGACTA CTACCTGGTG
GATGGCGGCG AGGTGAAGAG CTTCGACGGC GATCTCGACG ACTATCATCA GTGGCTGCTG
GACGCTGCCA AGGAGGCTAA CAAACCTGCC GCCCAGGATG ATGCGACACC AGCCCAGGAT
AAGAAGCTGC AGAAACGATT GGAAGCGGAG CTGAGACAGA AGCTGTCACC GCTGAAGAAG
GCTCAGGCCA AGCTTGAGAA GATCCAACAA GATTGCAGCG ACAAGCTGGC CGAGCTGGAA
AACCTGCTGG CCGACACCAG CCTGTATGAG GCCGATAACA AGGCCAGGCT CACCCAGATC
CTGGCCGAGC GAACCCAGCA TACTCAACAG CTTGAAGAGA GCGAGATGGA GTGGCTGGAG
CTGCAAGAGA ACATAGAGGC CATAGAGCAA GAGGCCAAGC TGCAGAGCTA A
|
|---|
| Protein sequence | MITITQAQLI RGSKTLLDEA SLTVYPGHKV GLVGANGTGK SSLLALIMGH LSLDKGEISV
PTGWQIATVA QETPALEVSA LEYVIDGDRE YRELEEALHK AQLEDNGHQI ALLHGKIDAI
GGYSIRARAA SLLAGLGFSE AEQQNPVKSF SGGWRMRLNL AQALLCRSEL LLLDEPTNHL
DLDTMYWLES WIKAYQGTLI LISHDRDFID AIVDEIVHVE HHKLNYYKGN YTAFERIRAE
RMAQQQVAYE RQQKERAHMQ SFVDRFRYKA SKAKQAQSRL KALERMTELL PSKADSPFYM
AFRAPEALPN PLVKMEQVSV GYGDKAILNH VHLNLVPGAR IGLLGRNGAG KSTLIKLLAE
QLKPMSGLYE PNPGLNIGYF AQHQLEFLRL DESPLQHLTR LAPNNREQEL RDFLGGYGFN
GDMALSPVRP FSGGEKARLV LALLVWQRPN LLLLDEPTNH LDLEMRHALT MALQDFEGAM
IIVSHDRHLL RLSCSDYYLV DGGEVKSFDG DLDDYHQWLL DAAKEANKPA AQDDATPAQD
KKLQKRLEAE LRQKLSPLKK AQAKLEKIQQ DCSDKLAELE NLLADTSLYE ADNKARLTQI
LAERTQHTQQ LEESEMEWLE LQENIEAIEQ EAKLQS
|
|---|
| |