| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0578 |
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| Symbol | argD |
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| ID | 4920604 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 655195 |
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| End bp | 656412 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162111 |
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| Product | bifunctional N-succinyldiaminopimelate-aminotransferase/ acetylornithine transaminase protein |
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| Protein accession | YP_001092709 |
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| Protein GI | 127511512 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4992] Ornithine/acetylornithine aminotransferase |
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| TIGRFAM ID | [TIGR00707] acetylornithine and succinylornithine aminotransferases
[TIGR03246] succinylornithine transaminase family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTGA ACCATAAGCT AACCCGAGCC CAGTTTGATG AAGTAATGGT GCCTAATTAT
GCACCTTCGG CTGTGATCCC TGTCCGTGGT GAGGGTAGCC GTGTTTGGGA CCAGGAAGGC
AACGAGTTTG TCGACTTCGC CGGCGGTATC GCGGTGAACT GTCTTGGTCA TTGTCATCCT
GCGCTAGTGG GCGCACTGAA AGAGCAGGGC GAGAAGATCT GGCACCTGGC CAACGTGATG
ACCAACGAGC CAGCACTGGC ACTGGCTACC AAGCTGGTTG AGGCCACTTT CGCCGAGAAG
GTTTATTTCG CGAACTCAGG TGCAGAAGCC AACGAAGCGG CCCTTAAGCT GGCCCGTCGT
TACGCCCTGG ACAAGTTTGG CGCCGAGAAG GATCAGATAA TCGCCTTCGA CAAGGCCTTC
CACGGTCGTA CCTTCTTCAC CGTGAGCGTG GGTGGTCAGG CGGCCTATTC AGACGGTTTC
GGTCCTAAGC CACAGTCTAT TACCCACCTA CCATTTAACG ACATCGCGGC GCTGGAAGCC
GAAGTGTCTG ACAAGACCTG TGCCATCATG CTCGAGCCAC TACAGGGCGA AGGCGGTATC
ATAGACGCCG ATCCTGAGTT CCTGCGTGCC GTACGTGCCC TGGCAGATAA GCACAACGCC
CTGGTGATCT TCGATGAAGT TCAGACTGGT GTGGGTCGTC TTGGTGAGCT TTATGCCTAC
ATGCGCACCG AAGTGACGCC TGACATCCTC ACCACAGCCA AGGCGCTGGG TGGTGGTTTC
CCTATCGCGG CCATGCTGAC CACTACAGAG ATCGCCTCTC ACCTTAAGAT TGGTACCCAT
GGTTCAACCT ACGGCGGTAA CCCATTAGCC TGTGCAATCG GTAACGCGGT ACTGGATGTC
GTGAACACGC CTGAGGTACT CGATGGTGTT AAACGTCGCG AGCAGCTGCT ACGTGATGGT
CTGAATCAGA TCAACGAAAA GTACCATGTG TTCACCGAGG TTCGCGGTCA AGGCCTGCTG
CTGGGCGCCG TGCTCAACGA GCAGTATCAG GGGCGCTCGA AAGATTTCTT GGTTGCCGGT
ACCAGCGAAG GCCTGATGTG CCTGATAGCC GGTCCAAACG TGATCCGCTT TACTCCTTCT
CTTGTTATCC CTGAGGCCGA TATCGCCGAG GGTCTTGCTC GTTTCGAACG TGCAGTAGCC
AAGGTTGTAG CTGGCTAA
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| Protein sequence | MSVNHKLTRA QFDEVMVPNY APSAVIPVRG EGSRVWDQEG NEFVDFAGGI AVNCLGHCHP
ALVGALKEQG EKIWHLANVM TNEPALALAT KLVEATFAEK VYFANSGAEA NEAALKLARR
YALDKFGAEK DQIIAFDKAF HGRTFFTVSV GGQAAYSDGF GPKPQSITHL PFNDIAALEA
EVSDKTCAIM LEPLQGEGGI IDADPEFLRA VRALADKHNA LVIFDEVQTG VGRLGELYAY
MRTEVTPDIL TTAKALGGGF PIAAMLTTTE IASHLKIGTH GSTYGGNPLA CAIGNAVLDV
VNTPEVLDGV KRREQLLRDG LNQINEKYHV FTEVRGQGLL LGAVLNEQYQ GRSKDFLVAG
TSEGLMCLIA GPNVIRFTPS LVIPEADIAE GLARFERAVA KVVAG
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