Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0564 |
Symbol | mutL |
ID | 4921930 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 639265 |
End bp | 641160 |
Gene Length | 1896 bp |
Protein Length | 631 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640162097 |
Product | DNA mismatch repair protein |
Protein accession | YP_001092695 |
Protein GI | 127511498 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0323] DNA mismatch repair enzyme (predicted ATPase) |
TIGRFAM ID | [TIGR00585] DNA mismatch repair protein MutL |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.273606 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCATAC GTATTTTGCC TCCTCAACTG GCTAACCAGA TTGCCGCCGG GGAGGTGGTA GAGCGTCCTG CCTCTGTGAT CAAGGAGTTA GTAGAGAACA GCCTGGATGC CGGTGCGACC CGGGTCGATA TCGAAATAGA CAAGGGCGGC AGCAAGCTGA TTAAGATCAC CGACAACGGC TCAGGCATTC CCAAGGAGGA GCTGAGTCTG GCACTGTCCC GTCATGCCAC CTCTAAGCTG GCCTCGTTAG ACGACCTCGA TGCCATCTTA AGCTTTGGCT TTCGCGGCGA GGCGCTGGCC AGTATCAGTT CGGTATCCCG CTTGACGTTA ACCTCCCGCA CCCAGGAGCA GAGCGAGGCC TGGCAGGCCT ATGCCGAGGG CTCCGAGATG GCGGTTCGGG TGATCCCGGC GGCGCACCCT GTCGGTTCGA CGGTGGAGGC GGCGGATCTC TTCTTCAATA CCCCGGCCAG ACGTCGATTC TTAAAGAGCG ATAAGACAGA ATTTACCCAT ATCGATGAGT GGCTTAAACG TATCGCTCTG GTGCGCAGCG AGATCCATTT TACCCTTAAG CACAACGGCA AGCAGGTGCG TAATTACCGC CCGGCCAAGA CAGAGGCGCA GTATCTGCAG CGCCTGGCGC AGGTCAGCGG CAAGGCCTTC GCCGACAATG CCCTCAGGGT AGATTGTAAC CATAATGGTC TTAGCCTCAG CGGCTACATT CAGTCGCCAT TTAGCGAGAT GGCGGTTGGC GATACTCAAT ATTTCTATGT AAACGGCCGC CTAGTGCGTG ATCGCCTGGT CAATCATGCG GTGCGTCAGG CCTTTGCCCA GCAGCTGCAG GGGGAGCAGG TCGCCTTCGT GCTCATGCTG AACCTGGATC CCCATCAGGT GGATGTCAAC GTGCATCCGG CCAAGCATGA GGTGCGCTTC CACGAGAGCC GATATGTGCA TGACTTTATC CTGCAGGCGC TGGAATCGGC ACTGCGTCAG TCGAGCGAGT TAGCCTTCGA GGCAGCACTC GACACTCAGG TAACTGACCA GAATAGATCC GCCTCCTATA TTCGTCCGCT ACAGACTCAG CAAAGTGACA CAGGCTCTAA TCAGATTGCC CATGGCGATA CCGAAGAAAA CGCCTTATGG CTTGCGAATG AACGCCCAGC CTATGGCGAG CGCGAAGCCA GTCGCCAAGC AGGTGGCCAG AGAGTGCAAG AGACCCAGAT GAGCAGCTAT GGTAGCGGCC AGTCTGGCGG GCGAGGGCGC AGCTATGCCA GTACCGAGCT TCCTAGCCAG GCGGCAGTCG ATAGTTATGC CCAGTTGATG ACCACGCCAG GCGTGTCGAG TCAGGCAAAC CAAGCAGATG ACAGCCATCT TCCGCCCATG CCTCAGGTGC TCGACGGTCA ATATTGGCTC TTAGTCAGGG GTAGTGAGCT GGCGCTATTG AGCCTTAGCT GTGCGGCGCG CGAAGTGACC CGCCGCGAGA TTGAAGCCAA GCTGGATGCG GGGCTGATTG GTCAGCCGCT GTTGATGCCT GTGTCGGTCA AGGTGGATGA AGATTGGCAG CAAACCTTGG TCGAAAGAGA GCTTTTGGTT AGAAAATTGG GTTTAGAGCT AACTATTCGC CTCGGCCAGT TGATAATTAA AAAAGTGCCC CCATATCTAA GGCAGAGTCA GCTGGCGAGC GTGATCCCTG AGTTTCTCCA GTGGATTCGC TTCGAAGAGC CGACAACGGA AGCCCTGGTT AACTGGTTGG TGAACCAGTC GGGTGAACAG TTTAATTCGG CGAGCCGACT CTGGGCCGGC CTCATGGGGT TACCCGAGTC GCAGCAGCAA GAAATTTTAT CTTTGGCCAA GGTGATGCCT TGGCAAACAT GGTTAGGTGA GCAAACGAGT GAATAG
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Protein sequence | MTIRILPPQL ANQIAAGEVV ERPASVIKEL VENSLDAGAT RVDIEIDKGG SKLIKITDNG SGIPKEELSL ALSRHATSKL ASLDDLDAIL SFGFRGEALA SISSVSRLTL TSRTQEQSEA WQAYAEGSEM AVRVIPAAHP VGSTVEAADL FFNTPARRRF LKSDKTEFTH IDEWLKRIAL VRSEIHFTLK HNGKQVRNYR PAKTEAQYLQ RLAQVSGKAF ADNALRVDCN HNGLSLSGYI QSPFSEMAVG DTQYFYVNGR LVRDRLVNHA VRQAFAQQLQ GEQVAFVLML NLDPHQVDVN VHPAKHEVRF HESRYVHDFI LQALESALRQ SSELAFEAAL DTQVTDQNRS ASYIRPLQTQ QSDTGSNQIA HGDTEENALW LANERPAYGE REASRQAGGQ RVQETQMSSY GSGQSGGRGR SYASTELPSQ AAVDSYAQLM TTPGVSSQAN QADDSHLPPM PQVLDGQYWL LVRGSELALL SLSCAAREVT RREIEAKLDA GLIGQPLLMP VSVKVDEDWQ QTLVERELLV RKLGLELTIR LGQLIIKKVP PYLRQSQLAS VIPEFLQWIR FEEPTTEALV NWLVNQSGEQ FNSASRLWAG LMGLPESQQQ EILSLAKVMP WQTWLGEQTS E
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