| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0561 |
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| Symbol | |
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| ID | 4921430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 635897 |
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| End bp | 637375 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162094 |
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| Product | carbohydrate kinase, YjeF-related protein |
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| Protein accession | YP_001092692 |
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| Protein GI | 127511495 |
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| COG category | [G] Carbohydrate transport and metabolism
[S] Function unknown |
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| COG ID | [COG0062] Uncharacterized conserved protein
[COG0063] Predicted sugar kinase |
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| TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0026662 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.240164 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTGTTTA GTGACGGGCA GCTACCATCG GCCTTATATA CGGCGCAGAT GATTCGTGAT
GCCGAAGCGC GCTTGATCGC GTCCGGTGAG GCTAACTTGT GCCAATTGAT CGACAGCGCC
GGACAGTCGG CCTTCGAGTT GCTGCAACGA GAGGGTAAGC TCAATAGTAA AATTCTGGTG
TTGGCGGGTT ATGGCAACAA TGGCGCCGAT GCCTATATCT GCGCCACCCT GCTGCTCGAA
TCTGGCTGTG ATGTCGCCCT CTATGCGGTG GAGCGTTCTG AGGCGGGCGA GGGGATCAGC
TACGCCAAGG CGGCCTTTCT CGCCGCGGGC GGGCATCAGT TATCTGACTA TGAAGAGGCG
CTCAAGGAGG CCGAGGTCGT CGTCGATGGC CTGCTAGGCA CGGGTGTCAA GGGTGAGCTA
CGTGCCCCCT TTGCCGAGAT GATAGTGGCG ATCAATCGTT ATTCTCCCTG GATCTTATCC
TTAGATGTGC CATCGGGTAT CGATGTGGAT ACCGGCGCCG GTCAGCTAGC GGTAAAGGCC
GATGTGACCT TGACCTTCGG CGCGCCGAAA CAGGGACTGA TCACGGGTAA GGCCAGGGAC
TGTGTTGGCA GGCTCTGGTT TGCCGATATC GGTCTGCAGG AGTATCTGCC AGAGTCTAAG
GTGCTTAACA TTGCCCACAG GCTGACGGAC CTCGGATTGC CTGCCAGGGC GCAGAACAGC
CACAAGGGGG CCTGCGGTAA GGTGACCGTT ATCGGCGGCG ATATCGGCAT GGCCGGGGCA
CCACGTCTGG CTGCCGAGAG CTGTCTGCGG GCGGGCGCCG GACTGGTGGC GGTGATTTCA
AGACCCGAGC ATTTGACCGT GGTGAACTCG GGGCGACCGG AAATTATGTT CTGGGGCTGC
GAGCTGGTGG ATATGGAAGT GTATCAACGC TTGGGCTGGG CGGATATTCT GCTGATTGGT
CCAGGACTGG GTAAACACGA CTGGGGCTAC AACCTGCTTA AGGCGACAGG GCTGAGCGAC
AAGTCCTGTG TGATGGACGC CGATGCACTT AATCTGCTGG CGCTCGAGCC TTCACGCCAG
AGTAATTGGG TGTTGACCCC TCACAGCGGT GAGGCCGCCA GGTTGTTGGG GATTAGCATC
GCCGAGGTGG AGGCGGATCG CTTCGCCGCC GTCTATGCCT TGCAGGCTAA ATATGGCGGC
GTGGTGGTGC TCAAGGGCGC AGGCACACTT ATCTATGACG GTAAGGTGTG TCATGTGGCG
CCGGTGGGAA ATCCTGGTCT CGCCAGCGGC GGCAGCGGTG ATGTCCTAGG TGGCATCATA
GCGGCCTTGA TGGCCCAGGG AATGGCTAAG ATGGAGGCGG CGAGCGCCGG AGTGGTGGTT
CATGGGGCCG CAGCGGATCT GGCCGCGAAA GATGGCGAGC GAGGCATGCT TGCCTGCGAT
CTGTTTGCTC ACATACGCGC CCTGGTCGAT AAGATTTAG
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| Protein sequence | MLFSDGQLPS ALYTAQMIRD AEARLIASGE ANLCQLIDSA GQSAFELLQR EGKLNSKILV
LAGYGNNGAD AYICATLLLE SGCDVALYAV ERSEAGEGIS YAKAAFLAAG GHQLSDYEEA
LKEAEVVVDG LLGTGVKGEL RAPFAEMIVA INRYSPWILS LDVPSGIDVD TGAGQLAVKA
DVTLTFGAPK QGLITGKARD CVGRLWFADI GLQEYLPESK VLNIAHRLTD LGLPARAQNS
HKGACGKVTV IGGDIGMAGA PRLAAESCLR AGAGLVAVIS RPEHLTVVNS GRPEIMFWGC
ELVDMEVYQR LGWADILLIG PGLGKHDWGY NLLKATGLSD KSCVMDADAL NLLALEPSRQ
SNWVLTPHSG EAARLLGISI AEVEADRFAA VYALQAKYGG VVVLKGAGTL IYDGKVCHVA
PVGNPGLASG GSGDVLGGII AALMAQGMAK MEAASAGVVV HGAAADLAAK DGERGMLACD
LFAHIRALVD KI
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