Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0559 |
Symbol | |
ID | 4922887 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 633209 |
End bp | 633754 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640162088 |
Product | oligoribonuclease |
Protein accession | YP_001092690 |
Protein GI | 127511493 |
COG category | [A] RNA processing and modification |
COG ID | [COG1949] Oligoribonuclease (3'->5' exoribonuclease) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.143761 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.198605 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGCAG ATGAAACAAA TCTGATCTGG GTAGATCTGG AGATGACGGG ACTAGAGCCC GAGGTCGACA GAATCATTGA GATAGCTACG ATTGTGACCG ACAAGGAGTT AAACATCTTG GCGGAAGGGC CAGTGATTGC CATCCATCAG AGTGAAGATG TGCTTGCGGC GATGGATGAC TGGAACCAGA AGCATCACGG CGAGTCGGGT CTGATCGACA GAGTCAGGGC GAGTGATTTT AGCGAGCAAG ATGCCATCGA GCAGACGATT GCCTTCTTAT CTGAGCATGT ACCTGCCGGT GTATCGCCAA TGTGCGGCAA CAGCATAGGT CAGGACAGAC GTTTCTTGAA TCGTTACATG CCGACTTTGG AAGATTATTT CCACTACCGC AACATAGATG TCAGTTCTGT CAAAGAGTTA GTGCGTCGCT GGAGGCCAGA GGTGATGGAC GGTTTTAAGA AGCAGGGCAC ACATCAGGCA CTGGTTGATA TCCAGGAATC GATCGCCGAA CTCCGATATT ATCGTGAGAA AGTATTTAAA ATTTGA
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Protein sequence | MAADETNLIW VDLEMTGLEP EVDRIIEIAT IVTDKELNIL AEGPVIAIHQ SEDVLAAMDD WNQKHHGESG LIDRVRASDF SEQDAIEQTI AFLSEHVPAG VSPMCGNSIG QDRRFLNRYM PTLEDYFHYR NIDVSSVKEL VRRWRPEVMD GFKKQGTHQA LVDIQESIAE LRYYREKVFK I
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