Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0557 |
Symbol | psd |
ID | 4924150 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 631134 |
End bp | 631994 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640162086 |
Product | phosphatidylserine decarboxylase |
Protein accession | YP_001092688 |
Protein GI | 127511491 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0688] Phosphatidylserine decarboxylase |
TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.122246 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGACAAAT TGAAGATTGC CTTGCAATAC ATAATGCCGA AACACCTGCT CTCGCGACTC GTGGGTAAAC TGGCAGCCGC CGAACTCGGC GCGGTAACGA CAAGCGTAAT TAAGTGGTTT ATCAAGCAGT ATAAGATAGA CATGAGCGAG GCCGCACAGA GTGCACCCGA AGCCTACGCC AGCTTCAACC AGTTCTTCAC CCGCGCCCTG AAGCCCGGTA TCCGCCCCCT GTGTGACGAT GACGACTATA TCGTTCATCC GGTCGATGGC GCCGTCAGCC AATGCGGACC GATCAAAGAA GGCCGTATCT TTCAAGCCAA GGGACATGAA TATTCGTCAC TTGCCCTTTT AGGCGATCAA GCCGATGATG CCAAGCGCTT CGAAGGCGGC GACTTCGCCA CCATCTATCT GGCACCTAAG GATTACCATA GAATCCACAT GCCGATTAAG GGCACCCTGT CTAAGATGAC CTATGTACCT GGCGAGCTGT TTTCGGTTAA CCCACTAACG GCCGAGAATG TGCCCGGTCT GTTTGCCCGT AACGAGCGCG TGGTGGCCAT CTTCGAAACC GAAATCGGCC CCATGGCCAT GGTCTTGGTT GGTGCCACTA TCGTGGCCAG CATAGAAACT GTCTGGGCAG GTACAGTCAC GCCGCCGACA GGCAAGAAAG TCTTCACCTG GGACTATCCA ACCGAGGGAC CAGAGGCGAT CACCTTGGAC AAGGGCGAGG AGATGGGACG CTTCAAGCTG GGCAGCACAG TCGTCATGCT ATTTGCCAAA GACGCGCTGG AACACTTTGC CGATGGCGTC GAGCCTAAGG CCGTTACCCG CATGGGTCAG GCCTTCGCCA AAATCGATTA G
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Protein sequence | MDKLKIALQY IMPKHLLSRL VGKLAAAELG AVTTSVIKWF IKQYKIDMSE AAQSAPEAYA SFNQFFTRAL KPGIRPLCDD DDYIVHPVDG AVSQCGPIKE GRIFQAKGHE YSSLALLGDQ ADDAKRFEGG DFATIYLAPK DYHRIHMPIK GTLSKMTYVP GELFSVNPLT AENVPGLFAR NERVVAIFET EIGPMAMVLV GATIVASIET VWAGTVTPPT GKKVFTWDYP TEGPEAITLD KGEEMGRFKL GSTVVMLFAK DALEHFADGV EPKAVTRMGQ AFAKID
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