Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0551 |
Symbol | |
ID | 4921913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 621922 |
End bp | 624189 |
Gene Length | 2268 bp |
Protein Length | 755 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640162080 |
Product | DNA topoisomerase IV subunit A |
Protein accession | YP_001092682 |
Protein GI | 127511485 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.243647 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGATG CGATAGATTT AAGCCTCGAT GGCGTCGAAC AGATGCCCTT GAGACGTTTC ACCGAAGAGG CGTATCTGAA CTATTCCATG TACGTCATCA TGGATCGCGC CCTGCCGCAT ATCGGCGATG GCCTAAAGCC GGTGCAGCGC CGTATCGTCT ACGCCATGAG CGAACTTGGC CTGTCGGCGC AATCTAAGCA CAAGAAGTCG GCGAGAACCG TGGGTGACGT ACTGGGTAAG TATCACCCTC ACGGCGACAG TGCCTGTTAC GAGGCCATGG TGTTGATGGC GCAGCCTTTC TCCTACCGCT ACCCACTGGT AGATGGTCAG GGTAACTGGG GCGCGCCGGA CGATCCTAAG TCATTCGCGG CCATGCGTTA TACCGAGGCG CGCCTGTCTA AGTTCTCCGA GGTGCTGCTG ACTGAGCTGG GTCAGGGCAC GGTCGATTGG GGGGTCAACT TCGACGGCAC GCTCAAAGAA CCCATGGTGT TGCCCGCCCG TCTGCCACAT ATCCTGCTCA ACGGCATCAC AGGGATCGCG GTGGGGATGG CGACCGACGT ACCGCCCCAC AATGCCCGCG AGCTGGTGGA TGCCTGTGTG GAGCTTATCG ACAACCCCAA GGTGGATCTG GAACGTCTGA TGGAGCTGGT ACCCGGCCCT GACTATCCCA CCGAGGCGGA GATCATCAGC CCGAGAACCG AGATCGCCAA GATCTACGAG ACGGGCCGCG GCTCCATCAA GGCCCGCGCC GTTTATAGCG TGGAGTCGGG CGAGATAGTG ATCACCGCGC TGCCCCATCA GGCCAGTGGC GGTAAGATTT TAGAGCAGAT CGCTGCCCAG ATGCAGGCCA AGAAGCTGCC CATGGTGGCC GACCTGCGCG ACGAGTCAGA TCACGAAAGC CCGGTGCGTA TCGTTATCGT GCCTCGCTCA AATCGTGTCG ATTGCGATCA GCTGATGGCG CACCTGTTTG CCACCACAGA TCTCGAGAAG AATTTCCGCG TCAACCTCAA CGTGCTGGGG CTCAATGGCC GTCCTCAGGT GAAGGGGCTG AAACAGCTGC TGACCGAGTG GCTGGAGTTC AGATTGACCA CGGTCAGACG CCGTTTAGAG CACAGATTAG ATAAGGTATT GGCAAGGTTA CATATTCTTG AGGCCTTGAT GATCGCCTTC CTCAATATCG ATGAGGTGAT CGAGATCATT CGTTACCACG ATGATCCCAA AGCCGAGCTG ATGTCGCGTT TTAACCTGAC TGACGAGCAG GCCAATGCCA TCCTGGATCT TAAACTGCGT CACCTGGCGA AGCTGGAAGA GTTTAAGATC AAGACGGAAC AGAGCGAGCT AGAGGCGGAG CGTGAGAAGC TTGAACTACT GCTGAGCTCA GATCGCCGCA TGAAGACGCT GATCAAGAAA GAACTTAAGC AAGACGCCGA AACCTATGGT GATGAGCGTC GCTCGCCGCT TGTCGAGCGT AGCGAATCCC GTGCCCTGTC TGAGCAGGAG TTGGTACCGG CCGAAGCGGT AACCGTAGTG CTGTCGGAGA AGGGATGGGT ACGCTGTGCC AAGGGGCATG ATATCGACCC TACGGCGCTC TCCTACAAGG CGGGTGACGG CTTCCTCTGC GCCGCGTCTG GCAGGAGTAA TCATGCAACC GTCTTTATCG GCTCGACGGG CCGCGCGTTT GCCACCGATA CCCATACCCT GCCATCGGCC AGGAGTCAGG GTGAGCCTGT GACTACCCGC TTCCAGCTGT CGCCGGGCGA GTCTATGGCC CATGCGCTGC TCGGAGAGGA TGGACAATGC TTCCTGCTGG CCTCAGATGC GGGCTACGGC TTTATCGGCG ATTACAAGGA TATGGTATCT CGCAACAAGG CGGGTAAGGC GCTGTTGAGC CTGCCGGCCA ATGCTCAGGT GCTGCCGCCG AAACGCGTGG ACAAGAGTCG TAGCGAGTCT ATCTTAGCGA TCACCAACGA GGGGCGCATG CTGCTCTTCT CCGTCGATGC TTTGCCGCAA CTGGCCAAGG GCAAAGGCAA CAAGATCATC GGCATCGCCA GTGACAGGGC CAAGAGCCGC GAAGAGCTGC TGGTGCATCT GCATGTAGTG CCGCAAGATA CCGCAGTTAC CCTGTGGGCG GGTAAGCGTA AGCTTACTCT CAAGCCGAGC GATCTCGAGC ACTACCGTGG CGAGCGTGGT CGTCGCGGCG CCAAGCTGCC TCGCGGTCTG CAACGAGTGG ATAAGGTGGA GCTTGGCGAG GACGAGACCA GTCTCTAG
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Protein sequence | MSDAIDLSLD GVEQMPLRRF TEEAYLNYSM YVIMDRALPH IGDGLKPVQR RIVYAMSELG LSAQSKHKKS ARTVGDVLGK YHPHGDSACY EAMVLMAQPF SYRYPLVDGQ GNWGAPDDPK SFAAMRYTEA RLSKFSEVLL TELGQGTVDW GVNFDGTLKE PMVLPARLPH ILLNGITGIA VGMATDVPPH NARELVDACV ELIDNPKVDL ERLMELVPGP DYPTEAEIIS PRTEIAKIYE TGRGSIKARA VYSVESGEIV ITALPHQASG GKILEQIAAQ MQAKKLPMVA DLRDESDHES PVRIVIVPRS NRVDCDQLMA HLFATTDLEK NFRVNLNVLG LNGRPQVKGL KQLLTEWLEF RLTTVRRRLE HRLDKVLARL HILEALMIAF LNIDEVIEII RYHDDPKAEL MSRFNLTDEQ ANAILDLKLR HLAKLEEFKI KTEQSELEAE REKLELLLSS DRRMKTLIKK ELKQDAETYG DERRSPLVER SESRALSEQE LVPAEAVTVV LSEKGWVRCA KGHDIDPTAL SYKAGDGFLC AASGRSNHAT VFIGSTGRAF ATDTHTLPSA RSQGEPVTTR FQLSPGESMA HALLGEDGQC FLLASDAGYG FIGDYKDMVS RNKAGKALLS LPANAQVLPP KRVDKSRSES ILAITNEGRM LLFSVDALPQ LAKGKGNKII GIASDRAKSR EELLVHLHVV PQDTAVTLWA GKRKLTLKPS DLEHYRGERG RRGAKLPRGL QRVDKVELGE DETSL
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