Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0544 |
Symbol | tolC |
ID | 4921172 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 614493 |
End bp | 615839 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640162073 |
Product | outer membrane channel protein |
Protein accession | YP_001092675 |
Protein GI | 127511478 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000576987 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.601769 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTAAAA AAGGACAGCT AATGAAATTT AAGATCCGCA CCTTATGTGC AGCGTTGACT CTCGCGGCAA CGACTTCTGC CGTGCATGCC GACGATCTAC TGCAGATATA TCAGCAGGCC CTTACCAATG ATCCTATTGC GCTCCAAGCA CAAGCGCAGC GCGACCGTCT CTACGAGCAG ATCGAAGAGA ACCGCGCCCC CTTGCTACCT ACCATCAGCG CCAGCGTAGG CTATGGAAAG AGCTGGACCA ATGTTGATGA TGACAAGTAC AACAGCGGAC TCGATGCTGG AGTGTCACTC AAGCAGGTGA TCTATGATCA CAGCGCCTGG GTCGGACTCG ACCTCGCAGA GCTTGCGGCG TCACAGGCCG ATGCAGCCTA TGCCTCGACA CTTCAGTCAC TCATCATTCG CGTAACAGGC GCCTACTTCG ACGTCTTAGC CGCGAAAGAT AACTATGAAT TCAAGGGCGC CGAGAAGCGT GCCATCGAGC GTCAGCTCGA GCAGACCAAG CAACGTTTTG CCGTGGGTCT CACCGCGATC ACCGACGTAC ACGAGGCTCA GGCCCAGTAT GACTTGGCCC GTGCATCGGA AATCCTGGCG GAAAACCAGC TGATCAACAG CTACGAAGCC CTCAGAGAGA TCACCGGCAT AGACCACAAG TCTATCGACA TTCTGGATAC CACACGTTTC ACCGCGGTAC CGCCAACCCC AGCCATGCCA AACGACTGGT TGAAGATGGC CGAGACCAGC AGTGTGGATC TGTTAACCAC GCGTATCGGT AAAGATATCG CCCAGCAGAC CATCTCGCTC TACAAGGCGG GCCACATGCC GTCTCTGAGC CTGAATGCCG GTTACACCAC CAACCTGAAT CAGAAGAATC AGGCAGGTGA TCTGAGCGAT TACGACAACG CCAACGTGGG TCTGACCCTG AGCGTGCCAA TCTTCGAAGG CTTTAAGGTG AGCTCTAAGG TTAACCAGGC GCAATACCAA TACGTAGAAG CCAGCGAGAA GATGGAACAG ACCTACCGCA AGGTAGTGAA AGATGTGCGT AACAACTTCA ACAACGTTGG CGCCTCTATC AGCTCTATCC GCGCCTATGA GCAATCGGTG ATCTCTTCTG AGAGTGCACT GAAAGCGACC CAGGCAGGTT TCGAAGTCGG TACCCGTACC ATCGTTGACG TACTCAACCG TACCCGTGAC CTGTATGACT CTAAGCGTCA GCTCTCTAAT GCCCGTTATG GCTATATCAA CTCTATCTTG GCGTTGAAAC AAGCGACTGG CACCCTGAGC GAAGACGATG TCATCGCCAT CAACAATGGC CTGAAGGCCC CTGAAGTCAG TCAGTAA
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Protein sequence | MSKKGQLMKF KIRTLCAALT LAATTSAVHA DDLLQIYQQA LTNDPIALQA QAQRDRLYEQ IEENRAPLLP TISASVGYGK SWTNVDDDKY NSGLDAGVSL KQVIYDHSAW VGLDLAELAA SQADAAYAST LQSLIIRVTG AYFDVLAAKD NYEFKGAEKR AIERQLEQTK QRFAVGLTAI TDVHEAQAQY DLARASEILA ENQLINSYEA LREITGIDHK SIDILDTTRF TAVPPTPAMP NDWLKMAETS SVDLLTTRIG KDIAQQTISL YKAGHMPSLS LNAGYTTNLN QKNQAGDLSD YDNANVGLTL SVPIFEGFKV SSKVNQAQYQ YVEASEKMEQ TYRKVVKDVR NNFNNVGASI SSIRAYEQSV ISSESALKAT QAGFEVGTRT IVDVLNRTRD LYDSKRQLSN ARYGYINSIL ALKQATGTLS EDDVIAINNG LKAPEVSQ
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