Gene Shew_0543 details

Gene Information

• Locus tag: Shew_0543
• ID: 4921171
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella loihica PV-4
• Kingdom: Bacteria
• Replicon accession: NC_009092
• Strand: +
• Start bp: 613667
• End bp: 614425
• Gene Length: 759 bp
• Protein Length: 252 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 640162072
• Product: hypothetical protein
• Protein accession: YP_001092674
• Protein GI: 127511477

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.00000718066
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 11
• Fosmid unclonability p-value: 0.604176
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAAAAAA CACTACTTGC ATGTGCTCTG CTCGGGTCTT TGGCAGCGAC ATCTGCACAG 
GCGGCTACTG TAGTTGGCTT CAAGGTGGGC GGCGACTACT GGAACGCCGA CACCGAGGGT 
ACTTTTGCTC AGAAGGGCCA GGCTCAACAG GAGTTTGATT ACAGCTCTTC ATCTCAGGGT 
AGTATCTGGG TCGCCGTCGA GCATCCGATT CCTTTAGTGC CTAACCTGAA GATCCGCGAA 
AACCGTCTGG ATGCAGATGG CAAGGCGACT TTGACCGGCG ACTGGACATT CGGCGATCGC 
GTATTTAGCG ACGATGTGAC CACGGCAAGC AACCTGAGCA ATACCGATTT CGTGCTCTAC 
TATGAGCTGC TGGATAACGA CATAGTGGCA CTGGATCTCG GCGCCGCCTA CAAGAAGATG 
CATGGCTCTT TCCGCGTACA TCAGATCTCG CCATCTGGCG TAGTAGGGGC TTACGCGCAG 
AAAGATCTTA GCGACGGCAT CGTCATGGCT TACGCCAATG CCGAGGTGGG CATTCCAGGC 
CTGGGTCTGT ATGGTTTTGC CGACGTGATG CAAGGCATAG ACGAGAGCAG CGTCTACGAC 
TATCAAGTGG GTCTGGGTTG GCAGTTTGAC GGCGTGGCGC TAGACACCAA GGTACGTGTC 
GGTTACCGCG ACTTTAACTT CGACGTGAAC AACTTCGATG GTGTGACCGC CAACATGCAG 
TTCAAAGGCT ATTTCGCCGG GGTTGAGCTG GTCTTCTAA 

 

Protein sequence

MKKTLLACAL LGSLAATSAQ AATVVGFKVG GDYWNADTEG TFAQKGQAQQ EFDYSSSSQG 
SIWVAVEHPI PLVPNLKIRE NRLDADGKAT LTGDWTFGDR VFSDDVTTAS NLSNTDFVLY 
YELLDNDIVA LDLGAAYKKM HGSFRVHQIS PSGVVGAYAQ KDLSDGIVMA YANAEVGIPG 
LGLYGFADVM QGIDESSVYD YQVGLGWQFD GVALDTKVRV GYRDFNFDVN NFDGVTANMQ 
FKGYFAGVEL VF