Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0535 |
Symbol | |
ID | 4923272 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 608229 |
End bp | 608891 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640162064 |
Product | single-strand binding protein |
Protein accession | YP_001092666 |
Protein GI | 127511469 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0629] Single-stranded DNA-binding protein |
TIGRFAM ID | [TIGR00621] single stranded DNA-binding protein (ssb) |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000686084 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAGTC GTGGTGTCAA TAAGGTAATT TTGGTCGGTA ACCTAGGGAA AGATCCCGAA GTTCGTTACA TGCCAAACGG CAACGCCGTA GCCAACTTTA CAGTGGCGAC CAGTGAGTCT TGGAAAGACC AGCAAGGTCA GATGCAAGAA CGTACAGAAT GGCACAACAT TGTAATGTAC CGTCGTCTTG CGGAGATCGC CGGTGAGTAC CTGAAGAAGG GCTCGAAAGT GTATCTGGAA GGTAAACTGC AGACCAGCAA GTGGCAGGAT CAGCAGACCG GACAAGATCG CTACAAGACA GAGATCAACG TTAACGAGAT GCAGATGCTG GATAGCCGTG GCCAAGGCCA AGGCGGTCAG GGTGGCCAAC AAGGTTACGG TGCGCCGCAA CAGCAAAACC AATACGCACC ACAGCAGTCG GCGCCAGCCG CGCGTCCACA GCAGCCGCAA CACTCGGCTC CTCAAGGTGG GTACGGTGCC CAGCAACAGG CAGCACCACA GCAGCAAGGT TATGGCGCTC AACCACAGCA GGCCCCTGCC TATGCACCTA AGCCGCAGGC GGCTCCACAA CAGCAAGCGC CGCAGCAGCG TCCAGCACCT CAGCCACAGC AGAACTTCAC GCCGGATCTG GATGACGGTT GGGACGACGA TATCCCGTTC TAG
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Protein sequence | MASRGVNKVI LVGNLGKDPE VRYMPNGNAV ANFTVATSES WKDQQGQMQE RTEWHNIVMY RRLAEIAGEY LKKGSKVYLE GKLQTSKWQD QQTGQDRYKT EINVNEMQML DSRGQGQGGQ GGQQGYGAPQ QQNQYAPQQS APAARPQQPQ HSAPQGGYGA QQQAAPQQQG YGAQPQQAPA YAPKPQAAPQ QQAPQQRPAP QPQQNFTPDL DDGWDDDIPF
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