| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0527 |
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| Symbol | |
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| ID | 4923875 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 596449 |
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| End bp | 597303 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640162056 |
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| Product | Sel1 domain-containing protein |
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| Protein accession | YP_001092658 |
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| Protein GI | 127511461 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGGA TAATCAAAAC ACTCTCAATC GGCTTGACCT TTTGGGCTAT TACGTCAACG
AGTTACGCTT CGGGATTGCC TGAGTGTGAC TCGGCAGAAT GTAAGGAATA TTTTAAGGCC
TATACCATCT TGACCAAGCG AGGTCACTCT GACGCCATGG CAACCCTGGG AGAACTCTAC
TATGCAGGTT ACGGCACCAA GAAAAACCCA GAGAAGGCGC TGAAGTGGTT TAGACGCGCC
GCCAAGTTTG GCAATACGAC GGCACAGTAC AAGGCAGCAG TCATGTACCT GCAAGAGACC
GACTATCAAG ATGTCGATAA GGCGATCTCG CTCTTGGAGC GCAGTATGAA GGTCAACTTC
TCTCCAAGTG CCTTAGTGTT AGGTAAGGTT TACCTCAACG ATACTCTGGT CAAGCAAGAC
CTTACCGAAG CCGACAAGTG GCTATCTCGC GCCTATGAGT TGAATAATGC CTCGGCTAAA
GTCTTTGCCG CTAACCTGAA AAAATCAGAA CTGGCCAAGA CTCTGCCGCT ACCTAAGCTA
TATGCCATGG TCGACGCAGA CAAGGACGCC AAACCAGGCA GCAATGCCCC TGTGGGTGAA
ATGGAAACCA TCACAGTAAC GGCACCCGAC TATAACCGCT ATTTCGACGA CGAAATTGCC
CGCCTCAATA ACAGCCGCCC AGATACAGAG TCGGGTACCG GCTCCAACAT CGCCGGACGC
ACCTGTGCCG AGATGTGGGG ATGTAGCACA GAGGGTGACA GTGAGCGTGT TAGAGATGTA
TTGCTGTCTG ACTGGGGAAG AGAGACCATT CCATTTAGAA TCGAAGGCCC TAACTACTAC
CCAAGCTCCC GTTAG
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| Protein sequence | MKRIIKTLSI GLTFWAITST SYASGLPECD SAECKEYFKA YTILTKRGHS DAMATLGELY
YAGYGTKKNP EKALKWFRRA AKFGNTTAQY KAAVMYLQET DYQDVDKAIS LLERSMKVNF
SPSALVLGKV YLNDTLVKQD LTEADKWLSR AYELNNASAK VFAANLKKSE LAKTLPLPKL
YAMVDADKDA KPGSNAPVGE METITVTAPD YNRYFDDEIA RLNNSRPDTE SGTGSNIAGR
TCAEMWGCST EGDSERVRDV LLSDWGRETI PFRIEGPNYY PSSR
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