| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0459 |
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| Symbol | |
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| ID | 4921829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 512269 |
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| End bp | 515961 |
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| Gene Length | 3693 bp |
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| Protein Length | 1230 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640161988 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001092590 |
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| Protein GI | 127511393 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.328016 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCGA CAGAGCCGGA CTTACAGCTT AAGTCTCCGA TTCAAAAAAA CTACAATCGC
GCGGTTTTCT ATACCTATAT CGGCGTGATC ATCATGGCGT TGCTGACGGC CTGGATCTTC
TTCGAGCGTC AAAAGACTCA GATGATGGAT CAGCGCGAAG AGCTGGTCGA GCGTCACGTG
TTGCAGATCG ACCTCCTGTT GGAATCCAGT ATCCGCGCGG TGAAGAGCCT GCGCAACGTG
GCGGTGGATC ACCTACGTCT GGGTGAGTTG GTGCGTACCG ACCGTCTGCC CCAGTATGAG
AAGTTTAACG AGAGCGGCCA GTTCTTCACC CTTGAGCCCA GCTATGCCCA GAGCGGCAAG
CCCTTCACCA ACATGGGGCG GATCACGGGC GCGGGCTCGC TCAATGGCCG CAGCGATAAG
TTTTATCAGG AGCTGGAGAT GCTGTTCGAG CTCTCCCTCT CCTTCCCGGT CGCCAGACAG
GCGGCGCCCA AGGCCTCCTC TATCTACTAC ATTTCCAAAC ATCGGATGAT GTCTTACTAC
CCCTGGCCCT CGGACGAACA GCGTTTTCGC GACGAGCTGC TGAAGAAGCA GCAGTTCCAG
CTGGTCACCC CGGCGATGAA CCCACAGCGC AGCGTGGCCT GGAGCCCGGC CTATGTGGAG
CCCAATGGCA AGGGGCTGTT GACCACGGTC GGCGTGCCCA TTTATCTGGA AGATGAGTTT
ATCGGCTCCA TCAACCTGGA CATGACCCTC TCCTCACTGG ATAAGCAGAT CCGCCTCTAC
TTCAAGATGC CGGGCACGGT AATCCTGCTG GATCAGCAGA ACAACATTCT CTCTCACAGC
GATATCGACG CCGCCGACAT CAACCGCGTC TTCCACATCA GCCAGAAGAT CCCCTCGGCG
CTGCACTCGG TGCCCGAGTC TGAGCTGTTC GATGCCCACG AGGGGATCAT GCGCAACGGC
TACTATATCC ACTCGGTGGC GCTGCAAAAT GCCCCCTGGC GCCTGCTCTA CCTGCAGGAT
GAGAACGAGC TGTTTAAGGA CTCCTGGGAG AAGCTGGAGC TGACCTTCCT GCTGGTGGTG
ATCGCCCTGT CTGTGCTGGT GACCATAGTG CACTGGCAGA CCCGCCGCTC CTTCGTTAAC
CCGGCGTCGC GTCTGTTGTC GCACCTTGAA GGCTGTTCTC AGGAGCCACG CAAGCCACCG
GCCAAGATCA CCCAGGGCTG GGAGCCCTGG TTCCAGCTGG TGAGTCGCAT CTTCGAAGAA
AACCAGCAAT ATACCCGTCA CCTGGCGGAG CAGAACCGTC GCCTGGATAA CCTGGTGGCG
CGGCGTACCG AGCGTCTCAA GGAGACCACG GAGCGGCGCG AGCGGGAATA CGCCCTGTTG
CGCTCCCTGC TGGATTCCAT CCCAGAGGCG ATCATCTTCA AGGATAAAGA GGGTAAATAC
CTGGGCTGTA ACAAGTCCGC CGAGCGCATG CTGGGTTATA CCGAGAGCGA GATGATAGGC
CAGGATTCCC AGACCATGAC CAGCAACGAG CAGTCGATGC GGATCCGCGC CGAGGATGAG
CGGGTGCTGT CCGAGCGCAC GCCGCTGCGC TATCAGGAGA AGGTGGAGCT GGCGGGCAAG
CCGGTGTTGC TCGATACCCT CAAGCTGCCT TTCTACAACC GCCGTGGCGA GCTGCTGGGC
CTGATCGCCG TATGGCGTGA CGTGACCCGG GAATATGAAT CGGCCGAGCA GCTCAGGCTG
TCGGAGGAGC GTTATCACCT GGCGATGGAC GCGGTAGAAG ATGGCCTGTG GGACTGGTAT
CTGGATTCCG AGCAGATCAT CTGTAACCCG GCTTACTACT CTATGCTCGG CTATAAGAGC
AACGAATTCC CGGCCCTGGT CTCTACCATA GACGAGCTGG TGCATCCGGA CGATCGCATC
CGGGTACAGG AGTATCGCGA GCAATACCTG GCGGATCCTA TCGGCGCCTA CGACGTCGAA
TTCCGTATGC GCGGCAAGAG CGGCATGTAC CACTGGGTGC TCAGCCGTGG CCGTGTGGTG
GAGTTCACCT CGGACAATCA GCCTAAGCGT ATGGTGGGTA CCCACAAGGA TATTACCCGC
CATAAGAGCA ACGAGGTGGC GCTGCTGGAA GCCAAGCAGG ACGCCGAATC GGCCAACCTC
TATAAGAGTG AGTTCCTGGC CAACATGAGT CACGAGATCC GCACGCCGAT GAACGCCATT
ATCGGTATGT TGCAGCTGGC CAGTCGCACC CAGTTGACGC CACAGCAGGC GGATTATCTG
GATAAGGCGG GCTTCTCGGC CCAGTCACTG CTGCGCATCA TCAACGACAT CCTCGACTTC
TCTAAGATCG AGGCCGGTAA GCTTGAGCTG GAGCGGGTCG CCTTCCCACT GGATAAGGTG
CTGGACCACG CCCTGGATCT CAACGCCCTC AAGGCACAGG AGAAGGGGGT CGAGCTGCTG
CTGTATGCAC CTGTCACCGC CGGGCTTATC CTCGAAGGGG ATCCTCTGCG TTTGGGTCAG
GTGCTGATCA ACATGCTCAG CAACGCGGTC AAATTTACCC AGAGCGGCGA GATCGAGCTG
GGCTGTGAAG ACGTGGGCGA GCGGGATCAC CGCATCACCC TCAAGTTCTG GGTGCGCGAC
ACCGGCATAG GGATCAGCAA GGAGCAGCAG GAGAGCCTGT TCGACGCCTT CGCCCAGGCC
GACGGCTCGA CCACCCGCAA GTATGGCGGC ACAGGTCTGG GTCTCTCCAT CAGTAAACAT
CTGGTTTCCA TGATGGGCGG CACCATGCAG GTGCAGAGTG AGCTAGGGGT CGGCAGTACC
TTCAGCTTCA CCATCAGCTT CGAGATCGCC GAAGAGGCCG AGGTGAAACC GCTTATCGTG
CCCGAGGTGA TCGGTAACCT GAAGACGCTG GTGGTGGACG ACAACCCGAC GGCGCTGCAG
ATCTATTCTA CCGCCATGCG CGATTTCCAC TTCGACGTGG ACACCGCATC CAACGGCGCC
GAGGCGCTAT ACAAGCTGGA GCACAGACCG GTGGATCTCC TGCTGCTGGA CTGGATGATG
CCAGAGATGG ATGGGGTCGA GGTGATCAAG GCACTGGATG CCATGGTGGC CGACGGCCGC
CTGGAGAAAC GTCCGGTGAT CATCATGATG ACCGCCTACG CCTCCGAGCC GCTCAAGGAA
GATCTGGACG ATCTCGACAT CTATGCCATG TTGCAGAAGC CGTTCAAGGC CTCGGCCCTG
TTCGACGAGA TCATCGCTGC CTTCATCGAC AAGCCCAAGA TCAATCCGGC GGCCGCGCTG
CCTGTGGAAG GCAACGCCAC GGGTACTGGG CAGATCCTGC TGGTGGAAGA CAACTTCATC
AACCAGCAGG TGGCGACCGA GCTGCTCAAG AGCGCGGGTT ACGAGGTGGA CGTGGCCGAG
AATGGTCAGG TGGCCCTGGA TATGGTGGAC GCCAAGCAGT ACGACGCCGT GCTGATGGAT
ATTCAGATGC CAGTGATGGA CGGTCTGACG GCCACCAAGG AGCTGCGTAA GCGCTACACC
AAGGAGGAGC TGCCGGTGAT CGCCATGACG GCCCACGCCA TGTCGGGGGA TCGCGAGAAG
AGCCTGGCGG CGGGCATGAA CGCCCACATC ACTAAGCCTA TCGTACTCAA CGAGCTGTTC
GACACCCTGG CCCAGTGGAT AGTGCGTCAC TAA
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| Protein sequence | MKSTEPDLQL KSPIQKNYNR AVFYTYIGVI IMALLTAWIF FERQKTQMMD QREELVERHV
LQIDLLLESS IRAVKSLRNV AVDHLRLGEL VRTDRLPQYE KFNESGQFFT LEPSYAQSGK
PFTNMGRITG AGSLNGRSDK FYQELEMLFE LSLSFPVARQ AAPKASSIYY ISKHRMMSYY
PWPSDEQRFR DELLKKQQFQ LVTPAMNPQR SVAWSPAYVE PNGKGLLTTV GVPIYLEDEF
IGSINLDMTL SSLDKQIRLY FKMPGTVILL DQQNNILSHS DIDAADINRV FHISQKIPSA
LHSVPESELF DAHEGIMRNG YYIHSVALQN APWRLLYLQD ENELFKDSWE KLELTFLLVV
IALSVLVTIV HWQTRRSFVN PASRLLSHLE GCSQEPRKPP AKITQGWEPW FQLVSRIFEE
NQQYTRHLAE QNRRLDNLVA RRTERLKETT ERREREYALL RSLLDSIPEA IIFKDKEGKY
LGCNKSAERM LGYTESEMIG QDSQTMTSNE QSMRIRAEDE RVLSERTPLR YQEKVELAGK
PVLLDTLKLP FYNRRGELLG LIAVWRDVTR EYESAEQLRL SEERYHLAMD AVEDGLWDWY
LDSEQIICNP AYYSMLGYKS NEFPALVSTI DELVHPDDRI RVQEYREQYL ADPIGAYDVE
FRMRGKSGMY HWVLSRGRVV EFTSDNQPKR MVGTHKDITR HKSNEVALLE AKQDAESANL
YKSEFLANMS HEIRTPMNAI IGMLQLASRT QLTPQQADYL DKAGFSAQSL LRIINDILDF
SKIEAGKLEL ERVAFPLDKV LDHALDLNAL KAQEKGVELL LYAPVTAGLI LEGDPLRLGQ
VLINMLSNAV KFTQSGEIEL GCEDVGERDH RITLKFWVRD TGIGISKEQQ ESLFDAFAQA
DGSTTRKYGG TGLGLSISKH LVSMMGGTMQ VQSELGVGST FSFTISFEIA EEAEVKPLIV
PEVIGNLKTL VVDDNPTALQ IYSTAMRDFH FDVDTASNGA EALYKLEHRP VDLLLLDWMM
PEMDGVEVIK ALDAMVADGR LEKRPVIIMM TAYASEPLKE DLDDLDIYAM LQKPFKASAL
FDEIIAAFID KPKINPAAAL PVEGNATGTG QILLVEDNFI NQQVATELLK SAGYEVDVAE
NGQVALDMVD AKQYDAVLMD IQMPVMDGLT ATKELRKRYT KEELPVIAMT AHAMSGDREK
SLAAGMNAHI TKPIVLNELF DTLAQWIVRH
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