| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0457 |
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| Symbol | |
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| ID | 4921736 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 507362 |
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| End bp | 510268 |
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| Gene Length | 2907 bp |
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| Protein Length | 968 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640161986 |
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| Product | ATP-dependent helicase HepA |
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| Protein accession | YP_001092588 |
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| Protein GI | 127511391 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.65643 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTTTT CCTTAGGTCA ACGTTGGATT AGTGATACCG AATCGGAACT CGGTTTAGGT
ACTGTCATTG GACTCGAAGG CCGTATGGTC ACCCTGATGT TCCCCGCCAC TGACGAAAAC
CGCATGTTTG CCCGCGACGA TGCCCCGCTA ACCCGAGTGA TCTATAACCC CGGCGATATC
ATTGAGAGTC ACGAAGGATG GAGTCTCAAG GTCAGCGAGA TCGAAGAGAA GAACCAGCTG
GTGATCTACC ACGGTATCCA CACCGAGACC GGCGAGGAGG TCAGCCTCAG AGAGACGCTG
CTTAACCACA ATATTCGTTT CAACAAGCCC CAGGATAGGC TATTTGCCGG CCAGATCGAT
CGTCTGGACA GATTCGGCGT GCGCTATCAG AGCCAGCTGC TGCGGCATAA GCTGGCCACC
TCAGATCTGC TGGGCCTACA GGGTCCCCGC GTCGGCCTGA TCCCCCATCA GCAGTGGATC
GCCCATGAAG TGGGCCAACG CTTCGCACCG CGCGTCCTGT TAGCGGACGA GGTGGGCCTG
GGTAAGACCA TAGAAGCCGG CCTGATCATC CACCAGCAGC TGCTGACCGG CCGCGCTGAG
CGTATCCTGA TCATAGTGCC AGACACCCTA CGCCATCAGT GGTTGGTGGA GATGCTGCGC
CGTTTCAACC TGCGCTTCTC GGTGTTCGAT GAAGACAGAT GCGTCGAAGC CTACGCCGAC
CACGACAACC CCTTCTACAC AGAGCAACTG GTGATCTGTT CACTCGAGCT GCTGCGTAAG
AAGAAACGCC TGGACCAGGC GTTGGATGCC GACTGGGATC TCATGGTGGT CGACGAGGCC
CACCACCTGG AGTGGACCGA AGAGGAACCG AGCCGCGCCT ATCGCGTGGT CGAGGCCCTG
AGTGAAGTGG TGCCCGGCGT GCTGCTACTG ACCGCCACAC CAGATCAGCT GGGCCACCAG
AGCCACTTCG CCCGTCTGCG TCTGCTGGAC CCGGACCGTT TCTACGACTA TCAGGCCTTC
CTCAAAGAGG AGGAGAGCTA TAAAGAGGTG GCCAGCGCCG CCGATGCTCT GGCCAGTGGT
AAACGTCTGC CCGACGAGGC CGTTGCCAGC CTGACCGAGC TGCTCAACGA GAAAGATATC
ACCCCGGCGC TGCGTCTGAT TGAAGATGAG AGTGTCGACA ACGAACAACG TGACCAGGCC
CGCAGCGAGC TGCTGCAGGA GCTGTTAGAC AGACACGGCA CCGGCCGCGT GCTCTATCGC
AACAGCCGCG CCTCGGTGAA GGGCTTCCCG ACCCGTATCT TCAACGCTCA CCCACAGACC
ATGCCGGCTC AGTATAAGAC AGCCGCCAGG GTGTCTGACA TGATGGGTGG CCAGACAGAT
CTGACCGCCA AGGTGAAACA GGCCCTGAGC CCAGAAAAAC TCTATCAGGC CTTCGAGAGC
GATAGCGCCA GTTGGTGGAA GTTCGACCCT AGGGTCGACT GGCTGATCGA TTTCCTCAAG
AACCATCGCA GCAAGAAGGT GCTGATCATC GCCAGCCAGG CGGAGACCGC CCTGAGCCTG
GAAGAAGCCC TGCGTACCCG CGAGGGCATT CAGGCCACCG TCTTCCACGA AGGCATGTCT
ATCATAGAGC GCGACAAGGC GGGCGCCTAC TTTGCCCAGG AAAGCGGCGG AGCCCAGGCG
CTGATCTGTA GTGAGATCGG CTCGGAAGGT CGTAACTTCC AGTTTGCCAG CCATTTGGTG
CTGTTCGACC TGCCGCTGAA TCCGGATCTG CTGGAGCAGC GCATCGGCCG TCTGGACCGT
ATCGGTCAGG CCAACGATGT CGAGATCCAT CTGCCTTACC TGGCCAACAC GGCCCAGGAA
AACCTGATGA ACTGGTACCA CAAGGGACTG AATGCCTTCG AACAGACCTG CCCTACCGGC
CATATTCTGT TTAACGAGTT TTCCGAAGAG CTGCTGACCC AGCTGGTCTA CCGCGACGAA
GACAAGTTCA CCCAACTGCT CAACCACACC CAGAGCCGTT ACAAGGCGCT GAAGAAGGCG
ATGGAACAGG GCCGCGACAA GCTGCTGGAG ATCAACTCCC ATGGCGGCGA CAAGGCGCAA
AAGTTGGTGG AGAATCTGGC AGCCCGCGAC CAGGACACCC AGCTGATCGG CTCTGTGATC
CGCCTGTGGG ATATCATAGG CGTCGAGCAG GAAGACAGCG GCGAGAACGC CATCGTGCTG
CATCCGAGCG AACACATGAT GTTCCCGACC TACCCTGGTT TGCCGGAAGA TGGCATTACC
GTCACCTTCG ACCGTGAGAT GGCGCTGTCC CGCGACGATA TCGCCCTGAT CACCCAGGAG
CACCCGCTGG TACAGACAGG GCTGGATCTG ATCACCTCTT CTGAGACAGG CACCACCAGC
GTCGCCGTGC TCAAGAACAA GGCACTACCT GCGGGCACCA TCTTCTTGGA GCTGATCTAT
ATGGCCGATG CCTCGGCGCC GCGTTCGAGC CAGCTCTACC GCTACATGCC GCCGACCCCG
GTACGCGTGC TGCTGGACAA GAATGGCAAC AACCTGTCGC AGAATGTCAG CTACGAGAGC
TTCGACAAGC AGCTAAGCGC GGTCAACCGC CATATCGCCA GCAAGCTGGT GAACGCCTCG
CAGACCCTGC TGCATCCGCT GTTTGCCAAG GGTGAGGAGT TTGCCCAGGC GGCGATGAAG
CAGCTGACCG AAGAGGCCAG CAACAAGATG ACCCAGCAGC TCACCGCAGA ACTGGAACGT
CTGGAGGCCC TCAAGGCGGT CAACCCCAAC ATTCGTGACG AGGAGTTGGA GCACCTGAGA
AATCAGATGG TCGAGCTGGG CAACTACTTA GATGCCTGTC AGCTGCAACT GGACGCCGTG
CGTCTGGTGC TAGTCAGCCA CGCCTAA
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| Protein sequence | MPFSLGQRWI SDTESELGLG TVIGLEGRMV TLMFPATDEN RMFARDDAPL TRVIYNPGDI
IESHEGWSLK VSEIEEKNQL VIYHGIHTET GEEVSLRETL LNHNIRFNKP QDRLFAGQID
RLDRFGVRYQ SQLLRHKLAT SDLLGLQGPR VGLIPHQQWI AHEVGQRFAP RVLLADEVGL
GKTIEAGLII HQQLLTGRAE RILIIVPDTL RHQWLVEMLR RFNLRFSVFD EDRCVEAYAD
HDNPFYTEQL VICSLELLRK KKRLDQALDA DWDLMVVDEA HHLEWTEEEP SRAYRVVEAL
SEVVPGVLLL TATPDQLGHQ SHFARLRLLD PDRFYDYQAF LKEEESYKEV ASAADALASG
KRLPDEAVAS LTELLNEKDI TPALRLIEDE SVDNEQRDQA RSELLQELLD RHGTGRVLYR
NSRASVKGFP TRIFNAHPQT MPAQYKTAAR VSDMMGGQTD LTAKVKQALS PEKLYQAFES
DSASWWKFDP RVDWLIDFLK NHRSKKVLII ASQAETALSL EEALRTREGI QATVFHEGMS
IIERDKAGAY FAQESGGAQA LICSEIGSEG RNFQFASHLV LFDLPLNPDL LEQRIGRLDR
IGQANDVEIH LPYLANTAQE NLMNWYHKGL NAFEQTCPTG HILFNEFSEE LLTQLVYRDE
DKFTQLLNHT QSRYKALKKA MEQGRDKLLE INSHGGDKAQ KLVENLAARD QDTQLIGSVI
RLWDIIGVEQ EDSGENAIVL HPSEHMMFPT YPGLPEDGIT VTFDREMALS RDDIALITQE
HPLVQTGLDL ITSSETGTTS VAVLKNKALP AGTIFLELIY MADASAPRSS QLYRYMPPTP
VRVLLDKNGN NLSQNVSYES FDKQLSAVNR HIASKLVNAS QTLLHPLFAK GEEFAQAAMK
QLTEEASNKM TQQLTAELER LEALKAVNPN IRDEELEHLR NQMVELGNYL DACQLQLDAV
RLVLVSHA
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