| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0414 |
|---|
| Symbol | |
|---|
| ID | 4922704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 468027 |
|---|
| End bp | 469172 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640161943 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001092545 |
|---|
| Protein GI | 127511348 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTTT TTGCCCTGAT GTTTGAAGAG CTTAAGGCTA TCGTTACCGA CAAGGCGATC
GCCATCACCC TGTTTGGCGG GGTGATCTTC TATTCGGTAC TCTATCCCTT GCCTTATCTT
AACGAGGTGC CGACCCGGCA GCAGATAGTG GTGGTCGATG GCGATCACTC CAGCCTGAGT
CGCCTGGTGA TCCGACATGC CCAGGCCAGC CCTAAGCTGG AGGTAGTGGC TCAGGTGGAT
GACCTGACCC AGGCACAGGC CGCCGTCAAC TCAGGGCAGG CCCATGGCTA TCTGGTGATC
CCCGAGGGGT TTCGCCGGGA TCTGCTGCGC CAGCGCGGCG TCACTCTGGC CTATGGCGGC
GATGCCAACT ATTTTCTGGT CTACTCGGCG ATCCTCGAGG GGCTGGTGTC TGTGGGGATC
GATGCGGGGA AATATATTCA GTTCCAGGGG CTGCTGGCCA GAGGCGAGGC GGCCAAGCAG
GTTCAGCGCG AGCTTGAGCC GATTCATCTC AACAGCGTGC CAGCTTTCAA TCCCAGCCTG
GGCTATACCT CCTACGTGGT GCCCGGCGTG CTCCTGTTGG TGTTGCATCA GACCCTGCTG
ATCGGCACCG GCATACTGGG CGCAGGTCAG TGGCGGCGTC AGGGGTATTG GCACAGCGTG
GGGCTCGGGC AGCTGCTGAG CGCCAGGGTG GCCACCTTCG GCCTCATCTA TAGCCTGTTT
ACCGCCTACT ACATAGGCTA CTGCCACTAC TGGTATCAGG TGGGCGTGCA GGGCAACCTG
GGGCAGGTCT GTCTGTTTCT GCTGCCCTTC TTGCTGGCCA CTAGCCTGGC GGGTATCGCC
TTTAGCAGCC TGTTTGTGCG CCGGGATCTA CCGACCCAGG TGTTACTGCT GATCTCCATG
CCTATCCTGT TTGTGTCGGG CTTCGTCTGG CCGGTGGAGC TGATCCCCGC GCCGCTGCAG
GCCGTGTCTC AGCTGATCCC CGGGGTGGTG ACCATCAAGG GAATGTTACA GCTTAATCAG
ATGGGGGCGG ACTGGCAGAG CGTCGCGCCG CTATGGTGGC AGCTGTGGGG CCTGGTGCTC
TTCTATCTGC TGCTGGCCTA TCTCGGGCTG CGTCTCAGAC TCGAGACAAG AAAAAGCCCG
CACTAG
|
|---|
| Protein sequence | MNLFALMFEE LKAIVTDKAI AITLFGGVIF YSVLYPLPYL NEVPTRQQIV VVDGDHSSLS
RLVIRHAQAS PKLEVVAQVD DLTQAQAAVN SGQAHGYLVI PEGFRRDLLR QRGVTLAYGG
DANYFLVYSA ILEGLVSVGI DAGKYIQFQG LLARGEAAKQ VQRELEPIHL NSVPAFNPSL
GYTSYVVPGV LLLVLHQTLL IGTGILGAGQ WRRQGYWHSV GLGQLLSARV ATFGLIYSLF
TAYYIGYCHY WYQVGVQGNL GQVCLFLLPF LLATSLAGIA FSSLFVRRDL PTQVLLLISM
PILFVSGFVW PVELIPAPLQ AVSQLIPGVV TIKGMLQLNQ MGADWQSVAP LWWQLWGLVL
FYLLLAYLGL RLRLETRKSP H
|
|---|
| |