| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0412 |
|---|
| Symbol | |
|---|
| ID | 4922231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 465874 |
|---|
| End bp | 466845 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640161941 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001092543 |
|---|
| Protein GI | 127511346 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.604128 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACTA ACAGAATCCT AGCCATTGTC GCCCTAATCG CCTTGGTGGC CATCCTGGCC
TACGGCTTGA TGCTGGCTCA TACGCCCAAG GCCGAGCGAC TGCAGGGGCA GATAGAGGCC
AGAGAGTACA ACATCTCCTC CAAGGTCCCA GGGCGCGTGG CGCAGGTCAT GGTGCGTCGC
GGCGACCAGG TGGCCGAAGG CGATCTCCTG TTTGCCATCG ACAGCCCTGA GCTCAATGCC
AAGCTGATGC AGGCTCAAGG GGGCCGCGAT GCCGCCAAGG CGTTGCAACA GGAGGCGGAT
AACGGCGCAC GTAAGCAGCA GGTGGCGGCT TCTAAGGAGC AATGGCTAAA GGCGAAGGCG
GCGGCTACCC TGGCCGAGAC CACCTACAAG CGGGTAGAAG CCCTGTTTAG CGAAGGCGTA
CTAGCCCGTC AGAAACGCGA CGAGGCCTTT ACCCAGTGGC AGGCGGCCAA GTACACCCAG
CAGGCGGCCT ATGCCATGTA TCAGATGGCC GAAGAGGGCG CCCGTGAAGA GACCAAGGCC
GCGGCCGAAG GCAATGCCCG CATGGCCGAG GGGGCGGTGA AAGAGGTCAG CGCCATTTTG
GCTGACAGCC AGATGCGCTC GCCCAAGTCC GGCGAGGTTA GCGAGGTACT GCTGCACCCG
GGCGAGCTGG CGCCAAGCGG CTTTCCTGTG GTGAGTGTTA TCGACATGCA GGATGCCTGG
GCCGTGTTTC AGGTGCGTGA AGATCAGCTT AAGGGCTTTA AGGTGGGCGA TACCCTGGAG
GTGGAGATCC CGGCGCTCGG CGAGCGTTAC CCTTTCAAGG TGGCGCACAT CAGCGTCATG
GGCCATTTCG CCACCTGGCG CTCCACCGAG AGTGGCCACG ACTTCGATAT GCGCACCTTC
GAGATGGAGC TAAGACCCGT AACCCCCATC GCCGACCTGA GGGTGGGTAT GACCAGCCTG
TTGGTGCAAT AG
|
|---|
| Protein sequence | MRTNRILAIV ALIALVAILA YGLMLAHTPK AERLQGQIEA REYNISSKVP GRVAQVMVRR
GDQVAEGDLL FAIDSPELNA KLMQAQGGRD AAKALQQEAD NGARKQQVAA SKEQWLKAKA
AATLAETTYK RVEALFSEGV LARQKRDEAF TQWQAAKYTQ QAAYAMYQMA EEGAREETKA
AAEGNARMAE GAVKEVSAIL ADSQMRSPKS GEVSEVLLHP GELAPSGFPV VSVIDMQDAW
AVFQVREDQL KGFKVGDTLE VEIPALGERY PFKVAHISVM GHFATWRSTE SGHDFDMRTF
EMELRPVTPI ADLRVGMTSL LVQ
|
|---|
| |