| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0411 |
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| Symbol | |
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| ID | 4921659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 464481 |
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| End bp | 465884 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640161940 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_001092542 |
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| Protein GI | 127511345 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0338477 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATATT CACATATTGT TTGGCTGTCG CTGTTAGCTC TGGCGGGTAA TGCCGCCCAG
GCAAAGGAGC TCGCCTTCGG CGATGCCTGG CAGCAGCTGT TGCAGGTCAG CGACAAGTTG
CAGGCCAGCC AGCAGGAGGT TAACCGTGCC CAGGCCGAAA AGGCCGCCGG GGAGGACCTC
AACCTGCCTT CGCTGTCGAT CAACGGCAGC TACACACGTT TAGAGAAACC CCTTGAGCTG
GACCTGAGGG ATCTCAACCC CTTAGCCAGT CTCGACCCCG CTACCTTGCC GCCGGCACTC
GGCGGTGCCC TGGGCGCCAT TCCGGGGTCG CTGTTTATCA CCCCTTTTAC CGAGCAGGAT
GTCTTCCGCT CCAGCCTGCA GGCGATGTGG CCCATCTATA CCGGTGGCCG TATCAGCGCC
GCCCAGGGGA TCCATGAGGC CCAGGTGGCC GAGAAGGAGC AGCAGCATCA GCTGTCTACC
CGGGATCTCT TCGTCCAGCT GGTGGACAGA TACTATGGCG TGGCCGTGAG CCACGCCCTG
ATGGCGACCC GTGGTCAGCT GGTGGATGCT CTGACTGAGC ACGCAGAGCA TGCGGTTAAA
CTTGAGCAGC AGGGACAGAT CGCCAAGGTG GAGCGTCTCA ACGCCCAGGT GGCCCTGGAA
AATGCCCGGG TGGATTATGC CAGCGCCAAG CGTCAGCTGG AGATGAGCCA GATAGCCCTG
TCGCGCATGC TGCATCAGAG CGATGTCGAT ACCGCCTCTA AGCTGTTTCT GCTCGATAAC
CCGCCCTCCC TCGGCCTGCT CAGTCAGCTG ACCCTGACTA GTCATCCGGC GCTTAAGCTG
CTTGAGGCCA AGGAGACCCA GGCCAACGGC CTTATCGATG TGGAGAAGGG CAGTTATTAC
CCTAGCGTCT TTCTCTACGG TAACTACACA CTATATGAAG ACGACAGTCT GCTGGCCAAG
ATGGAGCCGG ACTGGATGGT CGGCGTTGGG GTGAAGATCC CGCTTATCAG CCGCGACGGT
CGTAGCGGCA AGGTCGAGGC CGCCCGCAGC GCCCTGTTGC AGGCGCGCTA CACCAAGGCA
CAGACCCAGC AGGATCTCAG CCTGCTGCTG GATCAGAGTT ATCGCCAACT GCAGCAGGCC
AGGGAGGAGA CTGAGTCCCT CGACCTGTCG CTGTCGCTTG CCAAAGAAAA CAAACGCCTA
AGGGATCTCG CCTTCAGCCA GGGGCTGTCG ACCTCTATCG AGAAGGTGGA CGCCGAGCTT
AAGCTGAGCG GCGTGCAGAC CCAGCAGCTG GCGGCCCAGT ACCGCTATGT ACAGGCCTAC
GCCAGATTGA TGGCCATCAG TGGCCAGTTA GATGAATTTA TCGGTCGTTC ACGCACCGCC
CAGGAGAGAG CTGATGCGCA CTAA
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| Protein sequence | MRYSHIVWLS LLALAGNAAQ AKELAFGDAW QQLLQVSDKL QASQQEVNRA QAEKAAGEDL
NLPSLSINGS YTRLEKPLEL DLRDLNPLAS LDPATLPPAL GGALGAIPGS LFITPFTEQD
VFRSSLQAMW PIYTGGRISA AQGIHEAQVA EKEQQHQLST RDLFVQLVDR YYGVAVSHAL
MATRGQLVDA LTEHAEHAVK LEQQGQIAKV ERLNAQVALE NARVDYASAK RQLEMSQIAL
SRMLHQSDVD TASKLFLLDN PPSLGLLSQL TLTSHPALKL LEAKETQANG LIDVEKGSYY
PSVFLYGNYT LYEDDSLLAK MEPDWMVGVG VKIPLISRDG RSGKVEAARS ALLQARYTKA
QTQQDLSLLL DQSYRQLQQA REETESLDLS LSLAKENKRL RDLAFSQGLS TSIEKVDAEL
KLSGVQTQQL AAQYRYVQAY ARLMAISGQL DEFIGRSRTA QERADAH
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