| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0408 |
|---|
| Symbol | |
|---|
| ID | 4922997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 457734 |
|---|
| End bp | 462044 |
|---|
| Gene Length | 4311 bp |
|---|
| Protein Length | 1436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640161937 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001092539 |
|---|
| Protein GI | 127511342 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3164] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR02099] conserved hypothetical protein TIGR02099 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCACGCC CATTCTGTCC CCGCACCTTC GGCCGCCTAT GCTGGCAGAT GATCGCCATC
ATAGTGGTGC TTTTTGCCTT GAGCGTCAGC CTGTTCAGAG GCCTGCTGCC TAAGCTGGAT
CAGGTCCGTC AGGAGCTGGT GAGCTATATC TATGAGCAGT ATCAGGTCAA GGTCGAGGTC
AGCGAACTCA CCGCCGAGTG GCAGGCGTTT GGCCCTGCGG TGACCATCAA GAATCTGGTC
TTGCCGGTGC AGGAAAACCT GCCGGTCACC TTCATCATAG ACAATGTCCA CCTCAAGCTG
GATTTCTGGG ACAGCCTGGT CTCGGCGTCG CCCCAGATAG AGAATGTGAT CTTCGAGGGG
GTCAAGATCG CCCTGGATCT CGACCGTATC AGTCAAGCCG GTAACGGTCA GCAAAGCAGC
GATGCGCCAG TGGCAGAGCA GAATACCGAT TGGCTCTACG CCCTGATGCT GGAACAGTTC
GACCGCTTCG CCATCACAGA TGTGACCATG CAGCTGATCA GCAGCACTCA CAAATACCGA
CCTATCCATA TCAGGGATCT GCGCTGGCGC AACCTGGCCG GTCGCCACAG AGCCGAGGGC
GCGCTGTTCC TCGACGAGCA GGCCTCTGAG GTCGAGCGTC TCTCTCTCGC CGTCGATATT
CGTGGCGATG GCCATAACCC AGAGTCCTTG ACAGGTCAGC TCTATCTGGC GGCCAACTCG
CTGGATCTCG GTGAGTGGGC ATCACGCCAG GAAAATCCTT ATGCCTCGGG TAAGAAGCTG
CCACTCGAGG GGGTGGTGAA CCTGCAGGCC TGGGCCGAGT TCTCTAACCG CGCCTTTACC
GCGGCGACAG TCGCCTTCGA GCCGAGCTGG CTACAGTGGC AGCTCAAGGG CGAGCAGCAA
AAATTTGAGA TTAAGGCTGG CCAGCTAAAC TGGCAGCCGC AGGTCTCGGG CTGGCAACTG
ACCAGCTCAG ACCTAGCCTT CGTCACCAAT GGTCAGGCCT GGCCGGCGCT GCATATCGGC
GCGCGCAAGC GTGACGATCG GCTGATGGCC AGTATCAATC AACTGGATGC CGAGGTCTTG
TTGCCTCTGT TGCCCCTGGT ACCCGGCATG GATCTCGATG GCCTCTACCT GTGGCAGTCG
ATGGATCCCA AGGGCAGCAT AGAGCAGCTC AAGTTAGGTT ACGGTGAGCA GCAGGGCTTT
GCCCTGTCGG CGCAGCTTAA GCAGTTTGCC TGGCAAGGCA GCGGCGCCAT CCCAGGGGCT
GAGCCGATAG ACCTTATGCT CGGCATGCAG GGCAGCGACC TCTATCTGTC TGCGCCCGCG
CAGCAGTATC ACTTGGATTT TAATGGCGGC TTCGAGGAGG CATTGTCCCT CGCGGGTGAC
GCCTTCACGG TGAAATATGC CCTGGGCGAG GCGGAGCTGA TCGCCCCTAA GCTGCATTTC
TATAATGCCG ACCTGGATCT CGACGCGGCC ATGAAGCTGG ACTTTGCCGG TGAGGCCAGC
CTCAACCTGC TGGCCGATGT GCAGGTGAAG AACGCCGCCA GGGCCAAGTA CTATTTCCCT
AAGCATGCCA TGTCCGAATC TCTGGTCGAT TACCTCAGCG GCGCCATTAA GGCGGGGCAG
AGCCAGGACG CCAAGGTGGT GTGGAACGGC CCGCTGAAGC ATTTCCCCTA TGACGATAAC
AGCGGTGTGT TCCAGGCTGG TTTTTCTTTG AATCAGGCCC GCTACAGGTT CCAGCCCGAT
TGGCCCGAGG TGACCGAGCT GAGCCTAAAT GCCCTGTTTG AGAACGCGGC CATGGATATC
TGGGTGAACA AGGGGATGTT GATGCAGGTG CCGGCCGACG GCGCCCATGT TGCCATCCCG
CGCATGAGCC ATCAGACGCT ACTGACGGTG AAGGCGGATC TGCGCACCCA GGGCGAGGCC
GCCAAACAGG TGCTACAACG CTCACCTCTG GCCGATACGG TCGGGGCCAC GCTAGAGGTG
GTGCAGGTGC AGGGTGAGGT TTCGGGCAAG CTGGATCTCA GCATCCCCCT CTATCATGGT
GGCAAAGAGG CGATACTGGG ACAGGTGAAG TTCGACAATA CCCCTGTCTA TATCAGCGAG
CCGGGGGTAC AGCTAGATGG CGTGACCGGC GAGGTCTACT TTGCCAACGA GGTGGTCACA
GGTGAGAAGA TACAGGCGCG TCTGTTCGAG CAACCCGTGA GTTTCACCTT CGACACAGGC
AAGACCAACA AGCACTATGG CCTGAACTTA GATATGCAGG GCCAGTGGGC GCTGGCCTCG
CTGCCGGCGA TGTTGGACAA CCCCCTCAAG GATTACTACA GCGGCGAGCT GGATTGGCAG
GGCGCCATGA CGCTGATCTT CGATGAGTTG GGGTATCGTA TTCAGGCCCA GGTGAAGAGT
GACATGCAGG GCGTCGAACT GAGCCTGCCG GGTAAGTTTG CCAAGACGGC CGACAGCCCG
CGAGCCCTCT CCTTCGAGCT GATCGGTGAT AACAAGCAGG CCTCGTTAGG GGCCAAGCTT
GGGGATCAGA TGGAGTTCTG GGGCGGTTTC GATGAGGAGT CGGGCGACCA TCTGGCGCAC
TTCGATCTGC TGCTGGGACG CCTGTTTAAG CCGGGTGACC AACTCAAGCG TCAGGCCGGT
CATCTGCAGC TGGATATGCC TGCCACCGAA TTCGCCCCTT GGCTGCCAAT CATCAAGGGA
TTCATGGGCG ACGCGGCGCT GGAATCCTCA CTGGACCTGG CCATGCGGGA AGCATTAGCA
GAGCAGGCGC CTGAATCGCC GCTGGTGCAG GCAGAAACCG AGCCTAAAAA GAGCAGCTTC
TTCCCGCCGC TGATCGCGGT CGATGGTCAG GTACGCCAGT TGAACCTCTA TGGGCAGCCG
CTGACTGAGC TGAACCTTGA GGCGCATCCC ACAGAACATG GCTGGCGCTT CGAGGGCAAC
GCCAACGAAT TTAGCGGCCG GGTGGACTTC TATCCAGACT GGTCGACCCA GGGCTTAAAG
CTGGTGGCGA GCCGATTTAA CTTTGCGCCT GAGAGCAAGG AGGGCGAAGC CTCTGAGGTT
GCCAGCGATG AGGTGCTCAG CATACTGCCG CCGTTGGCGG TGGATGTGGA TCAGTTCAGC
GTCTATGGTA AGCCGCTGGG ACACCTGGTG TTGCAGGCAA CGCCCAAGAA TGGCGACTAT
CAGATCCAGA CCATCGCCAT CACCACCCCG GGTATCACCC TCAAGGGTAA GGGCGCCTGG
TCCAACAGTG AAGGGCAGAA CCTGACCGAG TTTCAGGTGG ATCTCAAGGC CAAGCAGTTC
GATGAGGTCT CGGAGCGCCT GGGCATAGAC CCAGGCCTCA AGGAGGCGCC GCTGGATCTG
CAGGCCGAGC TGTCATGGCA GGGGGCGCCC TATGCCTTCT CGCTGGAGAC CCTCAACGGT
CAGATCAGTT ACAAGCTGGG CAAGGGTCAC CTGTCTGAGG TGAGTGACAA GGGCGCGCGT
ATCTTCTCTT TGTTCAGCCT GGATTCCTTG CTGCGTAAGC TGTCGCTGGA CTTCTCCGAT
GTCTTCGGCA AGGGACTCTA CTTTAACGCC TTTACCGGCA CCCTTAAGCT GGATAACGGC
GTGGTGAAGA CCACGGACTC CGAGATGGAT GCGGTGGCCG GTAACATGAG GGTGCGGGGT
TATACCGACC TCACTACCGA GAGCCTCAAC TACGACATAC GCTTCGTGCC GCAACTGGCC
TCAAGCGTGC CCACTGTGGT GCTGCTCAGT ACCGGCGGTT GGACCCTGGG CCTGGGCGCC
TTCGCCCTGA CCAAAGTGTT GGAGCCGGTG ATCGAGGTGA TCTCTGAGAT CCGCTTCAGG
CTGACGGGCA CCATGTCTGA GCCTAAACTG GAGGAGCTGG AGCGTAAGAG CAAGGAGATA
GAGATCCCCG AGTCTGTCTT GCCGCGTCAA CGAGCGCCTG GCGCAGAAGC TAAGCCAGAG
AGCGTGCTGC CAGAAAGCAA ACAGCCAGCG CAATTAAAAC AAGAGCAGCA AGAACAGAAT
CCAGTGAAGC AGCCGGTGTT AGACGCTAAG CCAGAAGGAG CTTCGGCGGA TCAGCAGGTG
ATGCCATCGG GCGTTGAGAT CCCTAAGCCG GCGGTCGTCG CCATGCCCGA GTTTAAGGAG
ATGCCCACAG GGCAGCAGGC GCCAGTGGAG CAAAAAACTG AGACGCCGCA ACAGCAAGAG
TCACAGGAAA AGCCAGTGAG CAAGGAGTCA AGCGATGCAG GTCAGCCTAT TACAATGTCA
GAGTGGTCGC GACGTCGAGG AGAACCTCAG CTTTATTCGC GAGCAGCTTG A
|
|---|
| Protein sequence | MSRPFCPRTF GRLCWQMIAI IVVLFALSVS LFRGLLPKLD QVRQELVSYI YEQYQVKVEV
SELTAEWQAF GPAVTIKNLV LPVQENLPVT FIIDNVHLKL DFWDSLVSAS PQIENVIFEG
VKIALDLDRI SQAGNGQQSS DAPVAEQNTD WLYALMLEQF DRFAITDVTM QLISSTHKYR
PIHIRDLRWR NLAGRHRAEG ALFLDEQASE VERLSLAVDI RGDGHNPESL TGQLYLAANS
LDLGEWASRQ ENPYASGKKL PLEGVVNLQA WAEFSNRAFT AATVAFEPSW LQWQLKGEQQ
KFEIKAGQLN WQPQVSGWQL TSSDLAFVTN GQAWPALHIG ARKRDDRLMA SINQLDAEVL
LPLLPLVPGM DLDGLYLWQS MDPKGSIEQL KLGYGEQQGF ALSAQLKQFA WQGSGAIPGA
EPIDLMLGMQ GSDLYLSAPA QQYHLDFNGG FEEALSLAGD AFTVKYALGE AELIAPKLHF
YNADLDLDAA MKLDFAGEAS LNLLADVQVK NAARAKYYFP KHAMSESLVD YLSGAIKAGQ
SQDAKVVWNG PLKHFPYDDN SGVFQAGFSL NQARYRFQPD WPEVTELSLN ALFENAAMDI
WVNKGMLMQV PADGAHVAIP RMSHQTLLTV KADLRTQGEA AKQVLQRSPL ADTVGATLEV
VQVQGEVSGK LDLSIPLYHG GKEAILGQVK FDNTPVYISE PGVQLDGVTG EVYFANEVVT
GEKIQARLFE QPVSFTFDTG KTNKHYGLNL DMQGQWALAS LPAMLDNPLK DYYSGELDWQ
GAMTLIFDEL GYRIQAQVKS DMQGVELSLP GKFAKTADSP RALSFELIGD NKQASLGAKL
GDQMEFWGGF DEESGDHLAH FDLLLGRLFK PGDQLKRQAG HLQLDMPATE FAPWLPIIKG
FMGDAALESS LDLAMREALA EQAPESPLVQ AETEPKKSSF FPPLIAVDGQ VRQLNLYGQP
LTELNLEAHP TEHGWRFEGN ANEFSGRVDF YPDWSTQGLK LVASRFNFAP ESKEGEASEV
ASDEVLSILP PLAVDVDQFS VYGKPLGHLV LQATPKNGDY QIQTIAITTP GITLKGKGAW
SNSEGQNLTE FQVDLKAKQF DEVSERLGID PGLKEAPLDL QAELSWQGAP YAFSLETLNG
QISYKLGKGH LSEVSDKGAR IFSLFSLDSL LRKLSLDFSD VFGKGLYFNA FTGTLKLDNG
VVKTTDSEMD AVAGNMRVRG YTDLTTESLN YDIRFVPQLA SSVPTVVLLS TGGWTLGLGA
FALTKVLEPV IEVISEIRFR LTGTMSEPKL EELERKSKEI EIPESVLPRQ RAPGAEAKPE
SVLPESKQPA QLKQEQQEQN PVKQPVLDAK PEGASADQQV MPSGVEIPKP AVVAMPEFKE
MPTGQQAPVE QKTETPQQQE SQEKPVSKES SDAGQPITMS EWSRRRGEPQ LYSRAA
|
|---|
| |