Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0402 |
Symbol | |
ID | 4923579 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 450126 |
End bp | 452828 |
Gene Length | 2703 bp |
Protein Length | 900 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640161931 |
Product | MSHA biogenesis protein MshQ |
Protein accession | YP_001092533 |
Protein GI | 127511336 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0473177 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAATAGAC TCTTGCTAAC CTTGCTTGCT GGTTTGTTTT ACCTAGTCTT CTCCACAGGG GTTTTCGCCG TGCCTCAGTG TGATGCGATC TTTACCGACC CGCCAACCGG AAACCATAAT CCCGGCCTGG TGCCGCCCGA TGATATTGGG CCTAGACTCG GCAACCTCAC TTGTACTAAG TGGGGATGTT CTGGGCACAG TTCACGGTTC GCTCCCGGGG ATTACGACTT TGCTACTGGT GATTTTCAAA ATAAATCCTA TATGAGCACC ACGGGGAAAA CGGCTCGACT CTACTTCGAT AACCTGTCGA TGAATAATGC CAGCATCAAT GCATCTGGCA ATGCCGAAAA CCTGATCATC TATGTCAGGG GCGATCTCTC TGTCGCCGGG CAGAACTATC TCAACGGCAT CCTCTATGTT GCCGGCACTG TGACTTTTAC CGGCAATGCT TGGATAGATG GCGCCATCGC ATCAGGGGGG AGCCTGAGTT TTGGCGGCAA TGGTGGAGCG GATGTCGACC TGGGAGCTGT GGATGATGCC GACTTCGGCG GCATGTGTGA CAAGGGCGGT GTGAGTGTCG ACCATTACCG GCTCGAATTT ACCTCGGATG CGCTGAGCTG CGCCGCCAAA GATATCCTGC TGCGTGCCTG TGTCAACGCC GACTGCTCGA CCCAGGCGAG TGTCTCCTCG AGCGTCGAGC TGACCAAGAA CGGCGTGAAA TATGCCGATG TTGGCTTTAC CGGTTCGGCT CAGACCCAGG TGTGGCACCC AGACGGCGGC AGCGTCCTCT TGGGACTTGG CACTACGGCA CCATCCGCGC CCTATCGCTG TTATATCGAC GGTGCTCTGG TGGCTAATGC CCAGTGCCTG CTCGACTTTG CCGATACGGG ATTCTATTTC GATGTGCCCG ACAGCACCGC CTGTAAGACG GGTAACAGCT TTAATTTGTT TGCTGTGACC AAGGATACTC AGACTCAGCA GTGTAAGCCC CTGTTTGCCA ACCAGACCAA GACGATTAGC TTCGGCTTCG ATTATCTGCG TCCGGCAACG GTAAACAATC CGGCCCAGCT TACCCTGAAT AGCCTGTTAT CGCCGAGTGA CTCGATAGCG ATCGATGGTG GCGGCACTCA GACAATGCAG GTGCATTTTA ACGGTGAAGG AGTTGCCAGT CTGTCGGCCA ACTACCCAGA GGCGGGCGTG GTGACGCTTA GCGCCGAAAA TAACCACACT GTTTCGCGTC CTGCCGGAGG CTCAGAGACG CTAGTGCTCA CCCATAGCGA TAGCTTTACC TCGGCGCCCG CCGGTTTTCA TTTTGCCAAT GTCAGTGCCA ATGGGCGCTG TGATGCCAGC GATCCCTATG ACGCTGACTG TAAGGTGCTG GCCGCAGCGG GTGAACCCTT TAGCATGCAG GTGACTGCAG CCTGTTGGCA GAGCGATGAT GATAAGGATT TCGGTAACAA CAAGGCATTG CAGAATTTCG AGCATGGCGG CCTGTCCGTG GTGTCACAGG TGGTACAGCC CGATACCGGG GTAAACGGCG TGTTAGGCAG TGATAGCCTG GCGTTCTCAC TATCATCTGG CGTCAGCGCT CAGATCATCG ACGATCAAAG CTGGAGCGAG GTGGGCACCA TGAAGGTGGC GCTTGGCGCG GATGTCAGCT TTGAGGGCGT GACCATTCCC GCCAGCCAGT CTAGCAGTGA GGTATTTGGC CGTTTCACAC CGGCCTATCT AGAGATCACT GGCAACGACC CTGAGGCGGC CCAGAGCTGC GGCCCATTCA CCTATCTGGA TCAGCCCTTC GGCTTTAAAA CGGGCACCGA GCCAAACATT CAGGTGGCGG GGTTAAATGC CCAAGATAAG GTTACCAGCA ATTACCAGAT CGGCGATTGG TGGCGTTACA AACACAGGGA TGAGGCAGAT CGCAATCAGT GGCCTGAGCG CAGCTATCAA GACAGCACAG GGCTAGCTGT GATTGGCGAC AGTCAGGCAC CGGCACTCTC AGGCCAGGTC AATTATCGCG GTTCACCCAA TATCGCTGAG TTGATCGGCG CCCAGCCGAG TTACCGCCGC ACCCAAACGC CACAGGAACC CTTCGATGCC AAGTTTGATC TAATCTTGTC GGCGCTGGAC GTCAGCGATG AAGATGGCAT CTGTTATCGT GACAGCGCCT CGGCTGCTTG CCGCGGATTT ACCTTCAGCG ATATCGGCGA CGGTAAGGCC TTCGAGCTGC GCTATGGCCG TCTGGTGCTG GAAAACGGCT ATGGCCCTCA GTCGGAGGGC CTGCGGCTGC CGCTACGCAG CGAATATGTT TCAAGCGTGA CTGCTGGCGT GACCACCTGG ACACTCAATG GCGACGACAA TTGCTCGGTT TTTAATACCC AGACCTCCTT AGATGCCGGC GAGTCGGCAA CCTCTGGCCT GTATCGCATC CTACCTTCGG GCTTCCCCGA TCTGCAGGCC TATAGCGATA GTGGATTGTC GCTGCGCAGT GGTGCCTTGG TGAATGGCGT GGGCAATCTC TATTTTGCCA TCCCCAATCA GGCGGGCGAG GTGCCCCTCA AGCTGCATGT CGAGCCTTGG CTCAAGGGCT ATTGGAACTA TCCGGGGAAC GCTGCCGATA CCTTGTTTGA CCCGAGGGCC AATGCCTATT TTGGCACCTA TCGCGGACAC GATAAGATCA TCTATTGGCG GGAAGTGAAA TAG
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Protein sequence | MNRLLLTLLA GLFYLVFSTG VFAVPQCDAI FTDPPTGNHN PGLVPPDDIG PRLGNLTCTK WGCSGHSSRF APGDYDFATG DFQNKSYMST TGKTARLYFD NLSMNNASIN ASGNAENLII YVRGDLSVAG QNYLNGILYV AGTVTFTGNA WIDGAIASGG SLSFGGNGGA DVDLGAVDDA DFGGMCDKGG VSVDHYRLEF TSDALSCAAK DILLRACVNA DCSTQASVSS SVELTKNGVK YADVGFTGSA QTQVWHPDGG SVLLGLGTTA PSAPYRCYID GALVANAQCL LDFADTGFYF DVPDSTACKT GNSFNLFAVT KDTQTQQCKP LFANQTKTIS FGFDYLRPAT VNNPAQLTLN SLLSPSDSIA IDGGGTQTMQ VHFNGEGVAS LSANYPEAGV VTLSAENNHT VSRPAGGSET LVLTHSDSFT SAPAGFHFAN VSANGRCDAS DPYDADCKVL AAAGEPFSMQ VTAACWQSDD DKDFGNNKAL QNFEHGGLSV VSQVVQPDTG VNGVLGSDSL AFSLSSGVSA QIIDDQSWSE VGTMKVALGA DVSFEGVTIP ASQSSSEVFG RFTPAYLEIT GNDPEAAQSC GPFTYLDQPF GFKTGTEPNI QVAGLNAQDK VTSNYQIGDW WRYKHRDEAD RNQWPERSYQ DSTGLAVIGD SQAPALSGQV NYRGSPNIAE LIGAQPSYRR TQTPQEPFDA KFDLILSALD VSDEDGICYR DSASAACRGF TFSDIGDGKA FELRYGRLVL ENGYGPQSEG LRLPLRSEYV SSVTAGVTTW TLNGDDNCSV FNTQTSLDAG ESATSGLYRI LPSGFPDLQA YSDSGLSLRS GALVNGVGNL YFAIPNQAGE VPLKLHVEPW LKGYWNYPGN AADTLFDPRA NAYFGTYRGH DKIIYWREVK
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