Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0393 |
Symbol | |
ID | 4921127 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 444217 |
End bp | 445434 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640161922 |
Product | type II secretion system protein |
Protein accession | YP_001092524 |
Protein GI | 127511327 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.510231 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCTATCT ATCAGTACAA GGGGCGTGAT GCTCAGGGCA ATGCGGTTAG CGGGCGGCTC GATGCGACCA CTCAGAGCGC CGCCGCCGAT CAGCTGCTGT CTCGCGCCGT GATCCCCCTT GAGCTGGTGG AGGCCAAAGT TGCGCGCGAG TTCCACCTGG GCAGCCTGTT CAAGAGCAAG GTAGGCCTGG ATGAGCTGCA GATCTTTACC CGGCAGATGT ATTCGCTCAC CCGCTCGGGC ATCCCTATTC TGCGGGCCAT CGCCGGCCTG TCGGAGAGTT CTCACTCCAA ACGCATGAAA GATGCCCTCA ACGATATCTC AGAGCAGCTG ATCTCGGGTC GTCCGCTTTC ATCGGCGATG AACCATCACC CGGACGTGTT CGACGCCCTG TTTGTCTCCA TGATCCATGT GGGGGAGAAC ACGGGTAAGT TGGAGGACGC CTTTATTCAG CTTTCTGGCT ATATCGAACG CGAGCAGGAG ACCCGCAGGC GCATCAAGGC GGCGATGCGT TATCCCATCT TCGTCTTGAT GGCGGTGGCC CTGGCCATGG TGGTGCTCAA TATCATGGTG ATCCCTAAGT TTGCCGATCT GTTCGCCCGT TTCGGCGCGG ATCTGCCCTG GGCAACCAAG CTGTTGATCG GTACCTCTAA CTTCTTCGTC AACTACTGGT ACCTGCTGCT CATCGCCTTG GTGGGGTGCT TCGTGGGGAT CCGCTATTGG CACAATACAG AGAAGGGCGA GCAGCAGTGG GACAGGTGGA AGCTTAAGAT CCCAGCTGTG GGCAGCATCA TAGAGCGTTC GACCCTGTCG CGGTATTGCC GCAGCTTCTC CATGATGCTG AGTGCAGGCG TGCCCATGAC ACAGGCCCTG AGCCTGGTGG CCGATGCCGT GGATAATGCC TATATGCATG ACCGCATAGT GGCCATGCGC CGGGGCATAG AGTCCGGCGA GTCCATGCTG CGGGTGTCGA ATCAGAGTCA GCTCTTTACC CCGCTGGTGC TGCAGATGGT GGCCGTTGGT GAAGAGACGG GCCAGATAGA TCAACTGCTC AACGACGCCG CCGACTTTTA CGAGGGGGAG GTCGATTACG ACCTCAAGAA CCTGACCGCC AAGCTGGAGC CTATCTTGAT CGGCATAGTG GCGGTGATTG TTCTCATTCT GGCACTGGGT ATCTACCTGC CGATGTGGGA TATGCTCAAT GTGGTCAAAG GGGGGTAA
|
Protein sequence | MPIYQYKGRD AQGNAVSGRL DATTQSAAAD QLLSRAVIPL ELVEAKVARE FHLGSLFKSK VGLDELQIFT RQMYSLTRSG IPILRAIAGL SESSHSKRMK DALNDISEQL ISGRPLSSAM NHHPDVFDAL FVSMIHVGEN TGKLEDAFIQ LSGYIEREQE TRRRIKAAMR YPIFVLMAVA LAMVVLNIMV IPKFADLFAR FGADLPWATK LLIGTSNFFV NYWYLLLIAL VGCFVGIRYW HNTEKGEQQW DRWKLKIPAV GSIIERSTLS RYCRSFSMML SAGVPMTQAL SLVADAVDNA YMHDRIVAMR RGIESGESML RVSNQSQLFT PLVLQMVAVG EETGQIDQLL NDAADFYEGE VDYDLKNLTA KLEPILIGIV AVIVLILALG IYLPMWDMLN VVKGG
|
| |