Gene Shew_0393 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0393 
Symbol 
ID4921127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp444217 
End bp445434 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content58% 
IMG OID640161922 
Producttype II secretion system protein 
Protein accessionYP_001092524 
Protein GI127511327 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1459] Type II secretory pathway, component PulF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.510231 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTATCT ATCAGTACAA GGGGCGTGAT GCTCAGGGCA ATGCGGTTAG CGGGCGGCTC 
GATGCGACCA CTCAGAGCGC CGCCGCCGAT CAGCTGCTGT CTCGCGCCGT GATCCCCCTT
GAGCTGGTGG AGGCCAAAGT TGCGCGCGAG TTCCACCTGG GCAGCCTGTT CAAGAGCAAG
GTAGGCCTGG ATGAGCTGCA GATCTTTACC CGGCAGATGT ATTCGCTCAC CCGCTCGGGC
ATCCCTATTC TGCGGGCCAT CGCCGGCCTG TCGGAGAGTT CTCACTCCAA ACGCATGAAA
GATGCCCTCA ACGATATCTC AGAGCAGCTG ATCTCGGGTC GTCCGCTTTC ATCGGCGATG
AACCATCACC CGGACGTGTT CGACGCCCTG TTTGTCTCCA TGATCCATGT GGGGGAGAAC
ACGGGTAAGT TGGAGGACGC CTTTATTCAG CTTTCTGGCT ATATCGAACG CGAGCAGGAG
ACCCGCAGGC GCATCAAGGC GGCGATGCGT TATCCCATCT TCGTCTTGAT GGCGGTGGCC
CTGGCCATGG TGGTGCTCAA TATCATGGTG ATCCCTAAGT TTGCCGATCT GTTCGCCCGT
TTCGGCGCGG ATCTGCCCTG GGCAACCAAG CTGTTGATCG GTACCTCTAA CTTCTTCGTC
AACTACTGGT ACCTGCTGCT CATCGCCTTG GTGGGGTGCT TCGTGGGGAT CCGCTATTGG
CACAATACAG AGAAGGGCGA GCAGCAGTGG GACAGGTGGA AGCTTAAGAT CCCAGCTGTG
GGCAGCATCA TAGAGCGTTC GACCCTGTCG CGGTATTGCC GCAGCTTCTC CATGATGCTG
AGTGCAGGCG TGCCCATGAC ACAGGCCCTG AGCCTGGTGG CCGATGCCGT GGATAATGCC
TATATGCATG ACCGCATAGT GGCCATGCGC CGGGGCATAG AGTCCGGCGA GTCCATGCTG
CGGGTGTCGA ATCAGAGTCA GCTCTTTACC CCGCTGGTGC TGCAGATGGT GGCCGTTGGT
GAAGAGACGG GCCAGATAGA TCAACTGCTC AACGACGCCG CCGACTTTTA CGAGGGGGAG
GTCGATTACG ACCTCAAGAA CCTGACCGCC AAGCTGGAGC CTATCTTGAT CGGCATAGTG
GCGGTGATTG TTCTCATTCT GGCACTGGGT ATCTACCTGC CGATGTGGGA TATGCTCAAT
GTGGTCAAAG GGGGGTAA
 
Protein sequence
MPIYQYKGRD AQGNAVSGRL DATTQSAAAD QLLSRAVIPL ELVEAKVARE FHLGSLFKSK 
VGLDELQIFT RQMYSLTRSG IPILRAIAGL SESSHSKRMK DALNDISEQL ISGRPLSSAM
NHHPDVFDAL FVSMIHVGEN TGKLEDAFIQ LSGYIEREQE TRRRIKAAMR YPIFVLMAVA
LAMVVLNIMV IPKFADLFAR FGADLPWATK LLIGTSNFFV NYWYLLLIAL VGCFVGIRYW
HNTEKGEQQW DRWKLKIPAV GSIIERSTLS RYCRSFSMML SAGVPMTQAL SLVADAVDNA
YMHDRIVAMR RGIESGESML RVSNQSQLFT PLVLQMVAVG EETGQIDQLL NDAADFYEGE
VDYDLKNLTA KLEPILIGIV AVIVLILALG IYLPMWDMLN VVKGG