| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0306 |
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| Symbol | |
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| ID | 4923833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 329116 |
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| End bp | 331764 |
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| Gene Length | 2649 bp |
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| Protein Length | 882 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640161830 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_001092437 |
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| Protein GI | 127511240 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.212751 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAGGG ATAAAACAGA CCAACATTCA CCCCGTGAAG TTGGGCGTTT ATATAAAAGG
ATATCTCGCT TAAAGAGCCT GGCTCGGAAG TACAAGCGTT CTGAGATCGT CCAAAATACG
CTATTGGATA TCTCCAATCT TGCCGCTCGA GTCGAGCGCG CCGAAGACTT CTATGCTGGT
ATCCAAACCA ATCTCAATCG CCTGCTCCCC GCAGACAACT TCTTCATCGC CATCCTCAAC
AGAGAAACCA ACAAATTAGG CGTGCCTTTC TTCGTCGATG AGAAGGACCA GCACCCAAGC
CAGCTTTACC CCAGCGAAGA GTTATCTACC ACGCTCAACA GCGGCCTCAC CGGCTATGTG
CTGCGCAGTC AGCAACCCCT GCTGTGTGAT GACGACAAGT TTGAGCAGCT GCTCGCCAGC
GGCGAGATCG TCAGTCGAGG ATCCAGCTGC CACCAGTGGC TAGGGCTCCC AATTTTCAGC
AGCGATCAGA CCATAGGGGT GATCGCCGTG CAGAGCTACG ATGCCAATAT CACCTATGGC
GAGATAGAGG TCGAGCTGAT GACCTTCATC AGCCAGCATA TCTCGGGCGT TATCGAGAGG
GTGCAGTACC AACACAATCT CGAGGCCGCA ATTGAGCACA GAACCAAGGA GCTGAGCGTC
GCCTACGATA AGCTCAAGCA GGAGGTCACC GAGCGGCGAC GGGCGGAAAA CCTGCAGAAG
TCGCTGTTTG AGATAGCCGA GCTATCCAAT GCGACCATAG ACCACCAGAG CTTCTATCGC
GAGCTACACA GGGTGATCAG CCACCTGCTA CCGGCCAATA ACTGTTATAT CGCCCTGCTG
GAAGACAATG GCCGTGAGCT GCATTTTCCC TTTTATGTCT CTCAGCTCAA CGTAGGCGCG
CCGCAAAGGC GCCCTCTGGC CGATGGTCTG ACAGAGTTTA TTCTCAAGCA TAAGCGCCCT
TTGCTGCTCG ATGGCAGCGA CATCAAGGCG CTGATCAAGG CGGGGCAACT CTACGCCAAG
GCGCCGCAGC TCAACTATGC CGAGACCATA CATCAGTGGA TAGGCGTGCC CCTGTTTATT
CAAGGCATAG TCAAGGGCGC GCTCACCATC TACAGCTTTA CCCCGTCGCA GACCTACCAG
GAGAAAGATC TGGATCTGCT CACTTTCGTC TCGCAGCACA TCGCCGCGGC GATCGAGCGT
AAGCTATCGG CAGAGTCGCT GAAACAGAGC TATGAACAGC TGGAGGAGAA AGTCGCCCAG
CGCACCCGCG CCCTGGCGAT GCTCAACCAG GATCTCGAAA AGGAGATCGC CCAGCGCCGC
AAGGTCGAGC AGCAGCTGGT ACACGATGCC AGCCACGACA CCCTGACCGG CCTACCCAAT
CGAGCCATGT TCATGGAGCG CCTAGCCCAG GCGGTCAAGC ATGTCAGGCG CCACGCCAGA
GACAGGTTTG CCCTGCTGTT TATCGACCTC GACCGCTTTA AGCTGATCAA CGATACCCTG
GGCCATCTGC AGGGTGACCG TTTCCTGATT GAAACCGCCC GTCGCCTCAA CCTCTGCATC
AGGAGCAACG ACACCTTAGG GCGTATCGGC GGCGATGAGT TTGTGATCCT GCTAGACAGC
ATCAACACCA ATAGCGACGC CATCGAGGTG GCCGAGCGTA TCTTAGGCGA GCTGAGCGAG
CCCTATCAGC TATCGAATCA GAGCTTCACC TCGGGCGCCA GTATTGGCAT CGCCTTCAGC
GGCCACAGCA GCGGCGACAC CAGCGAGTCG CTGTTGAAGG ACGCCGACGC CGCCATGTAT
CAGGCCAAGT CCAACGGCAA GGGCTGCTTC GTCATCTTCG ATCACAACAC CAGCCATCAG
CAGAGCCATG ACATCACCCT GGAGATAGAG CTCAGAGAGG CGATCGCCAA ACAAGAGTTG
GCGCTGCAGT ATTTCCCCGT GTTGGCTTTG GCGACCCAGG AGGTTCTCGC CCTGGAGCCA
AGGCTCTACT GGCAGCATGA ACAGCTAGGC AAGATCAAAC AGGATCAGCT CAGCAATATC
GCCGAGCACT GCAACCTGAC CAAGGAGTTG GATCTCTATC TCTTCGACCA GCTCAACAGT
GACTATGACA AGGTGATGCA GCAGGTCGAC GGCCAGGTGC AGCTGCACAT CAAACTCGCC
AGTCAGCACC TGAAACATAA ACATGCGGTG CGCAAGCTGA AGAATCGCAT CAAGCAGAGT
TACTATAAAG CTGACGATAT CTGGGTATTC TTCAACGAGA AGGCCTTTGT CGCCGACAGC
GACAGCCATA TTCAGGCGTT CGACCTCCTG GCTAAGCAGG CCATCAACTT AGGCCTGTGC
GCCTACGGTA GCGCCCACAC GGCACTGAGC AGCCTCAGCT TCCTGCCCTT AAGCGGCCTG
AAGCTAGACC CTAGCTATAT CAGTCATCTA AATAATCCGC AGCAGAAACG CCTGCTTAAG
GCGCATCAGC TGACCGCCTC GGCGCTCGAG CTGACGCTAT TTGTGGAAGG GGTTAAGACA
GATCTGCATA GGCAGCAGCT GGTCAGCCTA GGCTTCGATC AGGGTCAGGG CCAGGCCCTG
GGTGAGTCTA TCGATCCCAG TAAGCTGCCC GAGCCCAGAA AGCGGCCGAG CGGCTGCATC
TCAGCCTAA
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| Protein sequence | MFRDKTDQHS PREVGRLYKR ISRLKSLARK YKRSEIVQNT LLDISNLAAR VERAEDFYAG
IQTNLNRLLP ADNFFIAILN RETNKLGVPF FVDEKDQHPS QLYPSEELST TLNSGLTGYV
LRSQQPLLCD DDKFEQLLAS GEIVSRGSSC HQWLGLPIFS SDQTIGVIAV QSYDANITYG
EIEVELMTFI SQHISGVIER VQYQHNLEAA IEHRTKELSV AYDKLKQEVT ERRRAENLQK
SLFEIAELSN ATIDHQSFYR ELHRVISHLL PANNCYIALL EDNGRELHFP FYVSQLNVGA
PQRRPLADGL TEFILKHKRP LLLDGSDIKA LIKAGQLYAK APQLNYAETI HQWIGVPLFI
QGIVKGALTI YSFTPSQTYQ EKDLDLLTFV SQHIAAAIER KLSAESLKQS YEQLEEKVAQ
RTRALAMLNQ DLEKEIAQRR KVEQQLVHDA SHDTLTGLPN RAMFMERLAQ AVKHVRRHAR
DRFALLFIDL DRFKLINDTL GHLQGDRFLI ETARRLNLCI RSNDTLGRIG GDEFVILLDS
INTNSDAIEV AERILGELSE PYQLSNQSFT SGASIGIAFS GHSSGDTSES LLKDADAAMY
QAKSNGKGCF VIFDHNTSHQ QSHDITLEIE LREAIAKQEL ALQYFPVLAL ATQEVLALEP
RLYWQHEQLG KIKQDQLSNI AEHCNLTKEL DLYLFDQLNS DYDKVMQQVD GQVQLHIKLA
SQHLKHKHAV RKLKNRIKQS YYKADDIWVF FNEKAFVADS DSHIQAFDLL AKQAINLGLC
AYGSAHTALS SLSFLPLSGL KLDPSYISHL NNPQQKRLLK AHQLTASALE LTLFVEGVKT
DLHRQQLVSL GFDQGQGQAL GESIDPSKLP EPRKRPSGCI SA
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