Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0293 |
Symbol | |
ID | 4920560 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 313397 |
End bp | 314947 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640161817 |
Product | threonine dehydratase |
Protein accession | YP_001092424 |
Protein GI | 127511227 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1171] Threonine dehydratase |
TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form [TIGR01127] threonine dehydratase, medium form |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGGCCC TTGCCTCTCA GTCTCAGCTG GATCTCGCCC ACTATTATCT GCAGAAGATC TTGCTGTCGT CGGTTTATGA TGTTGCCAAG GTGACGCCGC TCTCCAGCCT CAACAAGCTG TCGGCGCGCC TCGGCTGTCA GGTATTTCTC AAGCGTGAAG ATATGCAGCC GGTACACTCC TTTAAGCTGC GCGGCGCCTA CAACCGTATC GCCGAGCTGA GTCAGGAGGA GTGTCAGCGG GGCGTGGTGT GCGCTTCGGC GGGAAACCAT GCTCAGGGGG TCGCCATGTC GGCCTCGGCG CGTGGGGTGA GTGCGGTGAT CGTCATGCCC CAGACCACGC CGGATATCAA GGTGGATGCG GTGCGCCGCC TCGGCGGCAC TGTGGTGCTA TATGGCCAGT CCTTCGACAT GGCCAACGAG CATGCTCAGC AGCTTGCCCG CGATGAGGGA CGTATCTATG TGGCGCCATT CGACGATGAG GCGGTGATTG CCGGGCAAGG CACGGTCGCC CAGGAGATGC TGCAACAGCA GCGGGATCTC GAGGTGGTGT TCGTGCCCGT GGGCGGCGGC GGCCTGATCG CTGGTATTGC GGCCTACTAT AAGGCGGTGA TGCCCCAGGT GAAGATCATC GGCGTCGAGC CGGAAGACTC GGCCTGCCTC AAGGCGGCAC TGGAAGCCGA CGAGCGGGTG GTGCTGTCTC AGGTGGGCTT GTTTGCCGAT GGCGTGGCGG TGAAGCAGAT AGGCGCCGAG CCCTTCAGGT TGGCCCGCGA GTATGTGGAT CAGGTGGTGA CCGTCACTTC CGATGAGATC TGCGCCGCGG TCAAAGATAT CTTCGAGGAT ACCCGCGCCA TCGCCGAACC GGCGGGGGCG TTGTCACTGG CGGGGCTAAA GAAGTATATC GGTGACGAGG GCAAGGGGCA GAAGGTGGCG GCGATTCTCA GCGGCGCCAA TGTCAACTTC CACAGCCTGC GATACGTGTC CGAGCGTTGC GAACTGGGTG AACAGAAGGA GGCGATTCTG GCGGTGAAGG TGCCGGAGCA TCCGGGGATC TTCCTGCGCT TCTGTGAGCT GCTGGAAAAG CGCGCCATGA CAGAGTTTAA TTACCGCTTC TCTAGCCGTG AGAAGGCGGT GGTGTTTGCC GGTATTCGCC TGTCTCATGG CCAAGCTGAG CTGGACGAGA TAGTGGCACG GCTCGAGGGC GATGGTTTCG AGGTGCAGGA CCTGTCTCAC GACGAGACCG CCAAGCTGCA CGTGCGCTAC ATGGTCGGCG GCCTGCCGCC AGAGCCGCTG CAGGAGCGTC TGTTTAGCTT CGAGTTTCCC GAGCATCCTG GCGCCCTGTT TAAGTTTCTC ACTACCCTGC GCAGCAAGTG GAACATCAGC CTGTTTCACT ACCGCAACCA TGGCGCGGCC TACGGGCGGG TGTTGGCCGG TTTCGAGGTG CCCGAGAGCG ATAGCGTCGC CTTCCAGCAG TTTCTTACCG AGCTGGGCTT CGTCTATCAA GAAGAGACCC AAAGCCCGGC CTATAAGCTG TTTCTGGATA ATCGCGACTA A
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Protein sequence | MLALASQSQL DLAHYYLQKI LLSSVYDVAK VTPLSSLNKL SARLGCQVFL KREDMQPVHS FKLRGAYNRI AELSQEECQR GVVCASAGNH AQGVAMSASA RGVSAVIVMP QTTPDIKVDA VRRLGGTVVL YGQSFDMANE HAQQLARDEG RIYVAPFDDE AVIAGQGTVA QEMLQQQRDL EVVFVPVGGG GLIAGIAAYY KAVMPQVKII GVEPEDSACL KAALEADERV VLSQVGLFAD GVAVKQIGAE PFRLAREYVD QVVTVTSDEI CAAVKDIFED TRAIAEPAGA LSLAGLKKYI GDEGKGQKVA AILSGANVNF HSLRYVSERC ELGEQKEAIL AVKVPEHPGI FLRFCELLEK RAMTEFNYRF SSREKAVVFA GIRLSHGQAE LDEIVARLEG DGFEVQDLSH DETAKLHVRY MVGGLPPEPL QERLFSFEFP EHPGALFKFL TTLRSKWNIS LFHYRNHGAA YGRVLAGFEV PESDSVAFQQ FLTELGFVYQ EETQSPAYKL FLDNRD
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