| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0197 |
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| Symbol | |
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| ID | 4923936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 208521 |
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| End bp | 209021 |
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| Gene Length | 501 bp |
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| Protein Length | 166 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640161720 |
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| Product | hypothetical protein |
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| Protein accession | YP_001092328 |
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| Protein GI | 127511131 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0397493 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATAAAC TCGCGGCCAT GGGCCTATTA GCGCTCAGCT CCTTCACGCT GAACGCGGCT
ACGGATATGT TTCTCAAGAT AGATGGCGTC GATGGCGAGA GCCTGGACGC GCAGCACCGC
AACGAGATCG ATGTGCTCGC CTGGTCTTGG GGAGCAAGCA GCGATATGCG ACGCACCTGC
ATTCAAGATA TCAGTGTGAC CAAGTATGTG GATAGCGCCT CACCCCAACT CCTCATGAAC
CAGATGAGCC ACATGCAATA CCCTAGAGCG ACGCTGACGG TGCGCAAGGC GGGTGGCACA
CCTCTTGAAT ATATAGTGAT CGAATTACGC GACGTATGGG TCTCTAGCCT GTCTACCGGC
GGCTCTGGCG GAGAAGATCG CCTCACCGAG AACATCACCC TAAATTTTGA AGAGCTCAAA
TACCAATACA CACCACAAAA GGCAGATGGC AGCGGCGGAC CAGCGATCTC GGCCACCATC
ACAAGCGAGA AATGCAGATA G
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| Protein sequence | MYKLAAMGLL ALSSFTLNAA TDMFLKIDGV DGESLDAQHR NEIDVLAWSW GASSDMRRTC
IQDISVTKYV DSASPQLLMN QMSHMQYPRA TLTVRKAGGT PLEYIVIELR DVWVSSLSTG
GSGGEDRLTE NITLNFEELK YQYTPQKADG SGGPAISATI TSEKCR
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